Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 9.8e-175 616.7 312 100.0
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 3.5e-148 528.5 336 82.7
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 4.7e-68 262.3 329 48.9
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 2.6e-66 256.5 304 52.6
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 3.4e-66 256.1 214 63.1
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 4.4e-66 255.8 229 60.7
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 3.7e-65 252.7 229 60.7
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 3.2e-64 249.6 208 65.4
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 3.2e-64 249.6 240 57.5
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 7.0e-64 248.4 215 64.2
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 7.0e-64 248.4 214 63.6
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 2.0e-63 246.9 302 50.3
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 6.0e-63 245.4 266 53.4
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 7.8e-63 245.0 220 60.9
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 1.3e-62 244.2 311 47.3
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 1.7e-62 243.8 227 61.2
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 2.3e-62 243.4 300 48.3
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.3e-62 243.4 260 55.8
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 6.6e-62 241.9 254 54.7
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 1.5e-61 240.7 221 61.1
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 1.5e-61 240.7 313 47.9
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 2.5e-61 240.0 231 57.1
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 2.5e-61 240.0 209 60.8
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 3.3e-61 239.6 226 59.3
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 3.3e-61 239.6 312 46.8
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 3.3e-61 239.6 312 47.8
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 9.5e-61 238.0 248 55.2
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.2e-60 237.7 252 56.3
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 1.2e-60 237.7 198 62.6
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.6e-60 237.3 195 62.6
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 3.6e-60 236.1 231 56.7
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 3.6e-60 236.1 226 57.5
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 4.7e-60 235.7 195 62.1
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.1e-59 234.6 203 62.1
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.1e-59 234.6 251 55.0
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 1.4e-59 234.2 296 49.3
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 3.1e-59 233.0 221 58.8
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 4.0e-59 232.6 235 54.9
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 5.2e-59 232.3 209 61.2
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 6.8e-59 231.9 313 47.6
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 8.9e-59 231.5 209 61.7
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 1.2e-58 231.1 325 45.8
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 1.5e-58 230.7 214 60.3
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 2.0e-58 230.3 209 60.8
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.0e-58 230.3 209 61.2
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.0e-58 230.3 203 62.6
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.0e-58 230.3 203 62.6
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.6e-58 229.9 232 56.0
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 2.6e-58 229.9 296 47.3
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.6e-58 229.9 209 61.2
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 2.6e-58 229.9 197 64.5
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 3.4e-58 229.6 216 61.1
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.4e-58 229.6 205 61.0
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 3.4e-58 229.6 214 58.4
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 4.4e-58 229.2 204 60.8
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 5.8e-58 228.8 218 56.4
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.8e-58 228.8 205 61.0
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 5.8e-58 228.8 228 54.8
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 7.5e-58 228.4 202 58.9
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 7.5e-58 228.4 227 56.4
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 9.8e-58 228.0 212 59.9
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 1.3e-57 227.6 221 58.8
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 2.9e-57 226.5 201 61.2
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 6.4e-57 225.3 201 62.2
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 6.4e-57 225.3 201 59.2
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.4e-56 223.4 232 54.3
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 3.2e-56 223.0 202 59.4
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 3.2e-56 223.0 174 66.7
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 3.2e-56 223.0 303 46.9
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 5.4e-56 222.2 325 44.0
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 9.2e-56 221.5 214 59.8
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 9.2e-56 221.5 198 61.1
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.2e-55 221.1 291 48.8
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.2e-55 221.1 199 61.3
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.6e-55 220.7 203 59.6
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 1.6e-55 220.7 231 54.5
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 2.1e-55 220.3 232 53.9
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 2.1e-55 220.3 322 45.3
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 4.6e-55 219.2 181 64.1
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 6.0e-55 218.8 326 42.9
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 7.8e-55 218.4 203 58.6
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 7.8e-55 218.4 205 58.0
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 1.0e-54 218.0 196 58.7
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 1.0e-54 218.0 193 58.5
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 1.0e-54 218.0 193 58.5
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 1.3e-54 217.6 193 58.5
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 1.3e-54 217.6 193 58.5
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 1.3e-54 217.6 296 45.9
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 2.3e-54 216.9 176 63.6
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.3e-54 216.9 187 62.6
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 2.3e-54 216.9 258 51.2
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 2.3e-54 216.9 248 52.0
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 3.0e-54 216.5 196 58.7
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 3.9e-54 216.1 308 43.5
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 5.1e-54 215.7 251 48.2
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.1e-54 215.7 206 59.7
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 6.6e-54 215.3 174 63.8
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 1.1e-53 214.5 216 53.2
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 1.5e-53 214.2 294 45.9
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.9e-53 213.8 249 49.8
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 2.5e-53 213.4 150 72.0
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 2.5e-53 213.4 272 47.4
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 2.5e-53 213.4 229 50.7
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 3.3e-53 213.0 228 54.4
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 4.3e-53 212.6 219 53.9
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 4.3e-53 212.6 220 53.2
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 5.6e-53 212.2 216 52.8
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 5.6e-53 212.2 204 58.3
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 5.6e-53 212.2 239 49.4
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 9.5e-53 211.5 208 57.2
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 2.8e-52 209.9 148 68.9
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 2.8e-52 209.9 270 49.3
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 4.7e-52 209.1 333 42.6
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 6.2e-52 208.8 193 57.5
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 6.2e-52 208.8 214 53.3
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.1e-51 208.0 208 53.8
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 1.8e-51 207.2 206 54.9
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 1.8e-51 207.2 206 54.9
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 1.2e-50 204.5 150 67.3
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 2.0e-50 203.8 302 43.7
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 2.0e-50 203.8 182 57.1
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 4.4e-50 202.6 194 57.2
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.7e-49 200.7 193 55.4
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 3.2e-48 196.4 216 49.1
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 3.2e-48 196.4 216 49.1
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 7.1e-48 195.3 174 58.6
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.6e-47 194.1 185 56.8
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 2.1e-47 193.7 263 44.9
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 7.8e-47 191.8 184 56.0
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.0e-46 191.4 186 55.9
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 1.0e-46 191.4 267 44.2
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 3.3e-45 186.4 160 60.6
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 8.1e-44 181.8 240 48.3
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 4.0e-43 179.5 140 62.1
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 6.9e-43 178.7 148 62.2
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 6.9e-43 178.7 223 45.7
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 2.9e-41 173.3 185 48.6
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.9e-41 173.3 269 43.5
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 2.4e-40 170.2 193 47.7
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 2.4e-40 170.2 200 46.0
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 7.1e-40 168.7 197 46.7
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 4.6e-39 166.0 318 39.9
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 1.3e-38 164.5 182 53.3
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 3.9e-38 162.9 256 39.1
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-37 159.8 143 52.4
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 8.4e-33 145.2 95 69.5
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 3.2e-32 143.3 86 75.6
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 3.2e-32 143.3 98 68.4
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 6.0e-31 139.0 75 82.7
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.0e-30 138.3 292 36.3
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.3e-30 137.9 106 66.0
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.3e-30 137.9 290 36.6
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 6.7e-30 135.6 89 68.5
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 4.0e-27 126.3 152 52.6
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 2.0e-26 124.0 73 78.1
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 1.3e-22 111.3 229 37.1
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 1.5e-21 107.8 97 56.7
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.1e-20 104.0 65 73.8
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 1.0e-17 95.1 63 63.5
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 9.3e-16 88.6 130 35.4
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 2.1e-15 87.4 93 55.9
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 1.3e-12 78.2 50 72.0
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 6.9e-11 72.4 166 29.5
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 1.0e-09 68.6 60 66.7
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 2.5e-08 63.9 135 39.3
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 9.3e-08 62.0 65 53.8
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 3.6e-07 60.1 204 25.5


User provided reference genes

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