Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 4.0e-125 451.4 228 100.0
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 2.0e-116 422.5 228 95.2
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 3.9e-80 302.0 225 69.3
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 2.2e-78 296.2 229 67.7
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 3.7e-78 295.4 226 67.7
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 8.2e-78 294.3 228 66.2
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 8.2e-78 294.3 231 67.1
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 6.9e-77 291.2 229 65.5
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 6.9e-77 291.2 228 67.5
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 2.6e-76 289.3 228 66.2
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 3.4e-76 288.9 229 65.9
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 3.4e-76 288.9 227 67.8
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 1.0e-75 287.3 230 64.8
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 1.3e-75 287.0 227 66.1
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 2.2e-75 286.2 224 65.2
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 2.9e-75 285.8 235 63.0
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 3.8e-75 285.4 231 64.9
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 3.8e-75 285.4 224 66.1
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 5.0e-75 285.0 225 64.9
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 5.0e-75 285.0 225 64.9
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 5.0e-75 285.0 225 64.9
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 5.0e-75 285.0 225 64.9
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 8.5e-75 284.3 219 66.7
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.1e-74 283.9 225 64.9
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 1.1e-74 283.9 231 64.5
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 1.1e-74 283.9 227 64.3
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 1.4e-74 283.5 227 65.2
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 1.9e-74 283.1 227 64.3
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 1.9e-74 283.1 227 64.3
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 1.9e-74 283.1 226 65.5
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 2.5e-74 282.7 229 65.1
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 3.2e-74 282.3 230 62.2
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 3.2e-74 282.3 224 67.0
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 4.2e-74 282.0 222 62.6
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 4.2e-74 282.0 226 65.0
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 5.5e-74 281.6 230 64.3
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 5.5e-74 281.6 231 66.7
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 5.5e-74 281.6 235 64.7
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 9.4e-74 280.8 224 66.1
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.6e-73 280.0 227 66.1
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 2.1e-73 279.6 227 63.9
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 3.6e-73 278.9 222 64.0
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 4.6e-73 278.5 229 63.8
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 4.6e-73 278.5 229 63.8
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 4.6e-73 278.5 226 63.7
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 4.6e-73 278.5 231 61.0
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 6.1e-73 278.1 226 64.2
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 6.1e-73 278.1 224 63.8
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 6.1e-73 278.1 175 77.1
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 1.0e-72 277.3 224 63.8
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 1.4e-72 276.9 230 62.6
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 1.4e-72 276.9 224 64.3
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 1.8e-72 276.6 225 63.6
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 1.8e-72 276.6 225 63.6
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 1.8e-72 276.6 229 63.3
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 3.0e-72 275.8 192 70.3
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 6.7e-72 274.6 237 59.9
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 8.8e-72 274.2 229 62.9
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 1.5e-71 273.5 231 63.2
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 2.0e-71 273.1 176 72.7
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 2.0e-71 273.1 244 61.9
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 3.3e-71 272.3 236 61.0
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 5.7e-71 271.6 231 63.6
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 9.7e-71 270.8 240 60.4
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 4.8e-70 268.5 227 62.6
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 6.3e-70 268.1 231 58.9
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 1.8e-69 266.5 224 62.1
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 9.1e-69 264.2 231 60.6
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 9.1e-69 264.2 238 60.5
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 2.6e-68 262.7 222 60.8
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 3.4e-68 262.3 231 60.6
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 4.5e-68 261.9 232 62.5
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 7.7e-68 261.2 200 68.0
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 1.7e-67 260.0 254 56.3
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 6.5e-67 258.1 190 67.4
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 4.2e-66 255.4 233 58.8
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 7.9e-65 251.1 162 75.3
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 1.8e-64 250.0 229 57.6
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 1.5e-63 246.9 174 70.7
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 5.7e-63 245.0 183 65.6
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 7.4e-63 244.6 178 66.9
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 2.2e-62 243.0 229 56.8
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 2.4e-61 239.6 239 56.5
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 7.0e-61 238.0 232 55.6
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 4.5e-60 235.3 158 74.7
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 5.9e-60 235.0 158 72.2
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 1.7e-59 233.4 158 70.9
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 6.5e-59 231.5 227 54.2
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 1.1e-58 230.7 236 55.1
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 6.7e-56 221.5 220 54.1
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 2.6e-55 219.5 153 68.6
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 2.8e-54 216.1 224 51.3
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 1.7e-51 206.8 133 75.2
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 2.2e-51 206.5 140 75.7
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 7.2e-50 201.4 188 52.7
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 2.1e-49 199.9 133 72.2
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 3.6e-49 199.1 231 51.1
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 3.4e-47 192.6 134 71.6
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 1.7e-46 190.3 188 48.9
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 3.8e-43 179.1 123 73.2
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 1.1e-42 177.6 181 50.8
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 1.9e-42 176.8 135 64.4
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 7.2e-42 174.9 176 47.7
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 8.0e-41 171.4 95 80.0
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 1.3e-38 164.1 230 45.7
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 5.4e-37 158.7 205 40.0
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 2.3e-32 143.3 138 57.2
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 3.4e-31 139.4 134 58.2
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 2.4e-29 133.3 157 40.8
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 7.0e-29 131.7 153 48.4
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 7.8e-28 128.3 227 37.9
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 1.6e-17 94.0 57 75.4
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 6.2e-17 92.0 91 59.3
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 2.4e-13 80.1 177 28.8
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 2.7e-12 76.6 91 47.3
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 1.0e-11 74.7 127 28.3
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 9.9e-07 58.2 151 33.8


User provided reference genes

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