Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.6e-140 502.7 247 100.0
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 5.5e-80 301.6 247 59.1
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 3.6e-79 298.9 246 58.5
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 1.7e-73 280.0 247 53.0
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.5e-72 276.9 247 54.7
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 4.3e-72 275.4 247 55.9
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.1e-71 273.1 247 55.5
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 2.1e-71 273.1 250 54.4
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 4.7e-71 271.9 247 52.2
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 6.1e-71 271.6 247 53.4
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 8.0e-71 271.2 247 53.0
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 2.3e-70 269.6 247 52.6
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 3.1e-70 269.2 246 52.8
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 5.2e-70 268.5 248 53.2
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 5.2e-70 268.5 247 51.8
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 6.8e-70 268.1 257 53.7
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 8.9e-70 267.7 247 53.4
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 1.2e-69 267.3 247 54.3
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 2.0e-69 266.5 247 50.6
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 2.0e-69 266.5 247 52.6
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.6e-69 266.2 247 53.4
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 3.4e-69 265.8 247 53.0
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 5.8e-69 265.0 247 52.2
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 7.5e-69 264.6 247 53.4
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 7.5e-69 264.6 247 52.2
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 9.8e-69 264.2 247 52.6
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 2.9e-68 262.7 246 51.2
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 2.9e-68 262.7 247 51.0
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 3.7e-68 262.3 247 50.2
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.9e-68 261.9 247 53.4
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 6.4e-68 261.5 246 50.0
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.4e-67 260.4 247 49.8
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.9e-67 260.0 246 52.0
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.4e-67 259.6 247 53.0
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 2.4e-67 259.6 247 51.0
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 2.4e-67 259.6 247 50.2
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.2e-67 259.2 230 55.2
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.1e-67 258.8 246 51.6
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 4.1e-67 258.8 303 44.6
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 5.4e-67 258.5 247 49.4
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 5.4e-67 258.5 247 49.0
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 5.4e-67 258.5 248 52.4
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 7.0e-67 258.1 260 48.5
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.6e-66 256.9 247 51.0
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.0e-66 256.5 247 49.0
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 2.0e-66 256.5 247 52.6
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 2.0e-66 256.5 247 50.6
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 3.5e-66 255.8 247 50.2
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.5e-66 255.8 246 51.6
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 4.6e-66 255.4 248 51.2
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 6.0e-66 255.0 247 48.6
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 6.0e-66 255.0 250 50.0
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 6.0e-66 255.0 247 49.0
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.3e-65 253.8 246 50.4
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.7e-65 253.4 247 49.4
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.7e-65 253.4 247 48.6
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 3.9e-65 252.3 247 51.8
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.6e-65 251.1 253 49.8
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 8.6e-65 251.1 246 49.2
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.3e-64 249.2 246 49.6
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.3e-64 248.1 246 48.8
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 7.3e-64 248.1 247 49.0
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.2e-63 247.3 248 50.4
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 2.8e-63 246.1 247 51.8
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 6.2e-63 245.0 248 50.0
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 8.1e-63 244.6 247 50.2
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 1.1e-62 244.2 248 49.2
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.2e-62 241.9 247 51.4
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 8.9e-62 241.1 248 48.4
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.2e-61 240.7 316 44.0
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 2.0e-61 240.0 229 48.5
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 2.6e-61 239.6 247 49.8
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 3.4e-61 239.2 246 47.6
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 3.4e-61 239.2 247 49.8
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 5.8e-61 238.4 249 48.6
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 7.5e-61 238.0 247 49.8
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.3e-60 237.3 238 51.3
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.1e-59 234.2 231 49.4
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.9e-59 233.4 247 49.0
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.9e-59 233.4 247 51.4
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 3.2e-59 232.6 247 48.6
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 4.1e-59 232.3 247 46.6
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 2.1e-58 229.9 247 47.4
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 4.6e-58 228.8 247 49.4
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 4.6e-58 228.8 234 48.3
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 6.0e-58 228.4 248 49.6
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.7e-57 226.9 247 47.4
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.3e-57 226.5 248 49.2
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 3.0e-57 226.1 248 49.2
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 5.1e-57 225.3 254 46.5
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 6.6e-57 224.9 246 46.7
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 6.6e-57 224.9 247 47.8
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 8.6e-57 224.6 247 47.0
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 8.6e-57 224.6 247 47.0
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.5e-56 223.8 248 46.8
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.9e-56 223.4 254 46.5
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 7.3e-56 221.5 246 45.9
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 9.5e-56 221.1 247 47.0
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.2e-55 220.7 251 45.8
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.8e-55 219.5 284 43.0
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 6.8e-54 214.9 248 46.0
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.5e-53 213.8 248 47.2
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.0e-53 213.4 249 44.6
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.0e-53 213.4 247 45.3
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.4e-53 212.6 247 44.9
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 4.4e-53 212.2 250 46.0
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 9.9e-53 211.1 251 44.2
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 8.4e-52 208.0 248 44.0
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.4e-51 207.2 272 41.5
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 1.4e-51 207.2 272 41.9
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 3.2e-51 206.1 247 45.7
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 9.2e-51 204.5 211 49.8
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 1.0e-49 201.1 292 39.7
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 7.3e-48 194.9 212 49.1
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.6e-47 193.7 164 54.3
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 4.7e-47 192.2 245 41.6
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 2.2e-44 183.3 246 41.9
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 5.4e-43 178.7 252 40.9
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.2e-42 177.6 155 52.3
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.1e-42 176.8 223 40.8
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 7.8e-42 174.9 247 39.7
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.1e-40 171.0 248 40.7
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 9.6e-40 167.9 175 46.9
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 9.6e-40 167.9 144 58.3
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.3e-39 167.5 186 46.8
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.8e-39 166.4 191 42.4
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 2.2e-36 156.8 138 49.3
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 2.4e-35 153.3 145 53.8
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 5.4e-35 152.1 231 38.1
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.3e-33 146.7 248 36.3
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 7.3e-32 141.7 266 32.0
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.8e-31 139.8 155 44.5
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.8e-30 137.1 258 32.6
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 5.3e-30 135.6 211 36.0
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.0e-25 121.3 176 34.7
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 7.4e-24 115.2 82 63.4
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.4e-22 110.9 261 28.7
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.3e-20 104.4 179 32.4
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.3e-15 87.8 176 29.5
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 4.8e-15 85.9 81 49.4
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 5.3e-14 82.4 73 47.9
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.3e-12 77.8 118 35.6
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.7e-12 77.4 80 42.5
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 5.0e-12 75.9 87 47.1
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 6.5e-12 75.5 72 50.0
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 1.0e-09 68.2 90 40.0
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 3.9e-09 66.2 59 59.3
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.1e-08 64.7 50 56.0
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 1.1e-08 64.7 51 62.7
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 1.1e-06 58.2 59 54.2


User provided reference genes

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