Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1029 Ceratophyllum demersum HOM05D000558 ORTHO05D006060 1.6e-67 259.2 129 100.0
CDE02G4005 Ceratophyllum demersum HOM05D000558 ORTHO05D008033 3.4e-28 128.6 87 72.4
CDE04G3465 Ceratophyllum demersum HOM05D000558 ORTHO05D006060 4.1e-26 121.7 77 74.0
Cfa019914 Carpinus fangiana HOM05D000558 ORTHO05D006060 1.2e-17 93.6 90 48.9
TAR546G0003 Trochodendron aralioides HOM05D000558 ORTHO05D006060 3.5e-17 92.0 90 47.8
MBI13_g30270_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D006060 5.9e-17 91.3 97 45.4
PGR042G3619 Punica granatum HOM05D000558 ORTHO05D006060 5.9e-17 91.3 109 42.2
PSO339G1095 Papaver somniferum HOM05D000558 ORTHO05D006060 3.0e-16 89.0 90 45.6
Prupe.7G020600 Prunus persica HOM05D000558 ORTHO05D006060 3.0e-16 89.0 90 47.8
MD15G1257400 Malus domestica HOM05D000558 ORTHO05D006060 6.6e-16 87.8 90 47.8
TWI77G0858 Tripterygium wilfordii HOM05D000558 ORTHO05D006060 6.6e-16 87.8 94 48.9
CANSAT78G0694 Cannabis sativa HOM05D000558 ORTHO05D006060 1.1e-15 87.0 90 46.7
Aqoxy1G00104 Aquilegia oxysepala HOM05D000558 ORTHO05D006060 1.9e-15 86.3 90 47.8
Ca_08343_v3 Cicer arietinum L. HOM05D000558 ORTHO05D006060 3.3e-15 85.5 90 45.6
Sabra16G0030800 Salix brachista HOM05D000558 ORTHO05D006060 3.3e-15 85.5 90 45.6
Hma1.2p1_0221F.1_g093060 Hydrangea macrophylla HOM05D000558 ORTHO05D006060 4.3e-15 85.1 90 45.6
Psat3g082760 Pisum sativum HOM05D000558 ORTHO05D006060 4.3e-15 85.1 90 46.7
Eucgr.A02176 Eucalyptus grandis HOM05D000558 ORTHO05D006060 5.6e-15 84.7 90 48.9
Gohir.A04G010500 Gossypium hirsutum HOM05D000558 ORTHO05D006060 5.6e-15 84.7 105 41.9
MBI19_g17998_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D006060 5.6e-15 84.7 97 43.3
SHI24500 Sapria himalayana HOM05D000558 ORTHO05D006060 5.6e-15 84.7 105 38.1
GSVIVG01025840001 Vitis vinifera HOM05D000558 ORTHO05D006060 5.6e-15 84.7 90 45.6
Lj1A1078G61 Lonicera japonica HOM05D000558 ORTHO05D006060 9.5e-15 84.0 90 45.6
Potri.016G024900 Populus trichocarpa HOM05D000558 ORTHO05D006060 9.5e-15 84.0 90 45.6
CiPaw.10G122600 Carya illinoinensis HOM05D000558 ORTHO05D006060 1.2e-14 83.6 90 42.2
Ciclev10012628m.g Citrus clementina HOM05D000558 ORTHO05D006060 1.6e-14 83.2 90 47.8
Gohir.D05G377500 Gossypium hirsutum HOM05D000558 ORTHO05D006060 1.6e-14 83.2 105 41.9
Gorai.009G445300 Gossypium raimondii HOM05D000558 ORTHO05D006060 1.6e-14 83.2 105 41.9
vmacro11286 Vaccinium macrocarpon HOM05D000558 ORTHO05D006060 1.6e-14 83.2 90 46.7
Dinv11641 Davidia involucrata HOM05D000558 ORTHO05D006060 2.1e-14 82.8 108 38.9
Migut.J01566 Erythranthe guttata HOM05D000558 ORTHO05D006060 2.1e-14 82.8 102 39.2
Glyma.19G123600 Glycine max HOM05D000558 ORTHO05D006060 2.8e-14 82.4 90 43.3
CSS0006527 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D006060 3.6e-14 82.0 90 43.3
CSS0034662 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D006060 3.6e-14 82.0 90 43.3
Cpa.g.sc92.56 Carica papaya HOM05D000558 ORTHO05D006060 3.6e-14 82.0 90 43.3
Manes.09G074219 Manihot esculenta HOM05D000558 ORTHO05D006060 3.6e-14 82.0 91 42.9
CiPaw.09G162700 Carya illinoinensis HOM05D000558 ORTHO05D006060 4.7e-14 81.6 90 42.2
Cc06_g22730 Coffea canephora HOM05D000558 ORTHO05D006060 4.7e-14 81.6 90 42.2
MD02G1144000 Malus domestica HOM05D000558 ORTHO05D006060 4.7e-14 81.6 90 45.6
Medtr7g088310 Medicago truncatula HOM05D000558 ORTHO05D006060 4.7e-14 81.6 90 44.4
Rhsim02G0221000 Rhododendron simsii HOM05D000558 ORTHO05D006060 4.7e-14 81.6 90 46.7
Actinidia06449 Actinidia chinensis HOM05D000558 ORTHO05D006060 8.0e-14 80.9 90 44.4
DCAR_016943 Daucus carota HOM05D000558 ORTHO05D006060 8.0e-14 80.9 90 42.2
DCAR_020629 Daucus carota HOM05D000558 ORTHO05D006060 1.1e-13 80.5 91 42.9
Duzib093G0609 Durio zibethinus HOM05D000558 ORTHO05D006060 1.1e-13 80.5 90 44.4
Lalb_Chr14g0365291 Lupinus albus HOM05D000558 ORTHO05D006060 1.1e-13 80.5 90 42.2
Glyma.03G119300 Glycine max HOM05D000558 ORTHO05D006060 1.4e-13 80.1 90 38.9
THA.LOC104824385 Tarenaya hassleriana HOM05D000558 ORTHO05D006060 1.4e-13 80.1 90 41.1
VMungo1383G1708 Vigna mungo HOM05D000558 ORTHO05D006060 1.4e-13 80.1 90 41.1
Sed0009539 Sechium edule HOM05D000558 ORTHO05D006060 1.8e-13 79.7 90 45.6
TPR.G20690 Trifolium pratense HOM05D000558 ORTHO05D006060 1.8e-13 79.7 90 44.4
Ah.04g150180 Amaranthus hybridus HOM05D000558 ORTHO05D006060 2.3e-13 79.3 95 44.2
ATR1096G141 Amborella trichopoda HOM05D000558 ORTHO05D006060 2.3e-13 79.3 90 40.0
Nitab4.5_0001918g0070 Nicotiana tabacum HOM05D000558 ORTHO05D006060 2.3e-13 79.3 90 42.2
Nitab4.5_0000721g0170 Nicotiana tabacum HOM05D000558 ORTHO05D006060 3.1e-13 79.0 90 42.2
HPP92_014342 Vanilla planifolia HOM05D000558 ORTHO05D006060 3.1e-13 79.0 90 38.9
ClCG10G016560 Citrullus lanatus HOM05D000558 ORTHO05D006060 4.0e-13 78.6 90 43.3
Thecc.05G129900 Theobroma cacao HOM05D000558 ORTHO05D006060 4.0e-13 78.6 90 43.3
arahy.Tifrunner.gnm1.ann1.MFRM64 Arachis hypogaea HOM05D000558 ORTHO05D006060 5.2e-13 78.2 94 38.3
CAN.G245.6 Capsicum annuum HOM05D000558 ORTHO05D006060 5.2e-13 78.2 90 41.1
COL.COLO4_10582 Corchorus olitorius HOM05D000558 ORTHO05D006060 6.8e-13 77.8 90 43.3
Lj1g0006192 Lotus japonicus HOM05D000558 ORTHO05D006060 6.8e-13 77.8 90 37.8
HPP92_006507 Vanilla planifolia HOM05D000558 ORTHO05D006060 6.8e-13 77.8 78 44.9
arahy.Tifrunner.gnm1.ann1.B4HFY2 Arachis hypogaea HOM05D000558 ORTHO05D006060 8.9e-13 77.4 94 38.3
THA.LOC104814769 Tarenaya hassleriana HOM05D000558 ORTHO05D006060 8.9e-13 77.4 92 41.3
MELO3C009719.2 Cucumis melo HOM05D000558 ORTHO05D006060 1.2e-12 77.0 90 42.2
MSTRG.10770 Avicennia marina HOM05D000558 ORTHO05D006060 1.5e-12 76.6 109 37.6
Nn7g37160 Nelumbo nucifera HOM05D000558 ORTHO05D006060 1.5e-12 76.6 90 42.2
Ah.13g077410 Amaranthus hybridus HOM05D000558 ORTHO05D006060 2.0e-12 76.3 95 43.2
BcaC02g09880 Brassica carinata HOM05D000558 ORTHO05D006060 2.0e-12 76.3 90 40.0
A04p03630 Brassica napus HOM05D000558 ORTHO05D006060 2.0e-12 76.3 90 40.0
C04p35610 Brassica napus HOM05D000558 ORTHO05D006060 2.0e-12 76.3 90 40.0
BolC4t25243H Brassica oleracea HOM05D000558 ORTHO05D006060 2.0e-12 76.3 90 40.0
BraA04t16072Z Brassica rapa HOM05D000558 ORTHO05D006060 2.0e-12 76.3 90 40.0
AUR62020989 Chenopodium quinoa HOM05D000558 ORTHO05D006060 2.0e-12 76.3 90 41.1
Oeu060749.1 Olea europaea HOM05D000558 ORTHO05D006060 2.0e-12 76.3 90 41.1
RcHm_v2.0_Chr2g0122531 Rosa chinensis HOM05D000558 ORTHO05D006060 2.0e-12 76.3 90 41.1
BcaB02g08341 Brassica carinata HOM05D000558 ORTHO05D006060 2.6e-12 75.9 90 40.0
A07p23160 Brassica napus HOM05D000558 ORTHO05D006060 2.6e-12 75.9 90 40.0
BraA07t29977Z Brassica rapa HOM05D000558 ORTHO05D006060 2.6e-12 75.9 90 40.0
CARHR167100 Cardamine hirsuta HOM05D000558 ORTHO05D006060 2.6e-12 75.9 90 41.1
TPR.G24656 Trifolium pratense HOM05D000558 ORTHO05D006060 2.6e-12 75.9 108 38.9
BcaB02g07633 Brassica carinata HOM05D000558 ORTHO05D006060 3.4e-12 75.5 90 40.0
BcaC08g44812 Brassica carinata HOM05D000558 ORTHO05D006060 3.4e-12 75.5 90 40.0
BolC6t37556H Brassica oleracea HOM05D000558 ORTHO05D006060 3.4e-12 75.5 90 40.0
Migut.K00175 Erythranthe guttata HOM05D000558 ORTHO05D006060 3.4e-12 75.5 109 34.9
Lsat_1_v5_gn_9_30301 Lactuca sativa HOM05D000558 ORTHO05D006060 3.4e-12 75.5 90 41.1
C06p23880 Brassica napus HOM05D000558 ORTHO05D006060 4.4e-12 75.1 90 40.0
EL10Ac3g07350 Beta vulgaris HOM05D000558 ORTHO05D006060 5.8e-12 74.7 90 41.1
HanXRQChr10g0291951 Helianthus annuus HOM05D000558 ORTHO05D006060 5.8e-12 74.7 90 41.1
Sc19g0007840 Simmondsia chinensis HOM05D000558 ORTHO05D006060 5.8e-12 74.7 90 43.3
AUR62018444 Chenopodium quinoa HOM05D000558 ORTHO05D006060 7.5e-12 74.3 90 42.2
Psat0s2987g0040 Pisum sativum HOM05D000558 ORTHO05D006060 7.5e-12 74.3 90 43.3
Sp5g05640 Schrenkiella parvula HOM05D000558 ORTHO05D006060 7.5e-12 74.3 90 38.9
AT3G56950 Arabidopsis thaliana HOM05D000558 ORTHO05D006060 9.8e-12 73.9 90 38.9
Potri.006G027200 Populus trichocarpa HOM05D000558 ORTHO05D006060 9.8e-12 73.9 90 38.9
Sopen01g025410 Solanum pennellii HOM05D000558 ORTHO05D006060 9.8e-12 73.9 90 40.0
Nn7g37159 Nelumbo nucifera HOM05D000558 ORTHO05D006060 1.3e-11 73.6 111 33.3
CDE02G1115 Ceratophyllum demersum HOM05D000558 ORTHO05D006060 1.7e-11 73.2 90 38.9
Thhalv10006214m.g Eutrema salsugineum HOM05D000558 ORTHO05D006060 2.9e-11 72.4 90 37.8
CDE02G1694 Ceratophyllum demersum HOM05D000558 ORTHO05D006060 6.4e-11 71.2 35 97.1
Carub.0005s2369 Capsella rubella HOM05D000558 ORTHO05D006060 8.3e-11 70.9 90 37.8
Peaxi162Scf00168g00310 Petunia axillaris HOM05D000558 ORTHO05D006060 1.1e-10 70.5 90 40.0
Phvul.001G108800 Phaseolus vulgaris HOM05D000558 ORTHO05D006060 1.1e-10 70.5 96 36.5
AL5G38380 Arabidopsis lyrata HOM05D000558 ORTHO05D006060 1.4e-10 70.1 90 36.7
Aa31LG10G11870 Aethionema arabicum HOM05D000558 ORTHO05D006060 2.4e-10 69.3 90 42.2
A09p49820 Brassica napus HOM05D000558 ORTHO05D006060 2.4e-10 69.3 90 38.9
BraA09t40435Z Brassica rapa HOM05D000558 ORTHO05D006060 2.4e-10 69.3 90 38.9
HanXRQChr04g0125531 Helianthus annuus HOM05D000558 ORTHO05D006060 2.4e-10 69.3 87 39.1
HanXRQChr06g0178141 Helianthus annuus HOM05D000558 ORTHO05D006060 2.4e-10 69.3 90 41.1
Hund24508 Selenicereus undatus HOM05D000558 ORTHO05D006060 3.2e-10 68.9 94 36.2
ECA236G5030 Erigeron canadensis HOM05D000558 ORTHO05D006060 1.6e-09 66.6 77 42.9
Sc13g0000760 Simmondsia chinensis HOM05D000558 ORTHO05D006060 1.6e-09 66.6 88 38.6
Duzib128G0051 Durio zibethinus HOM05D000558 ORTHO05D006060 2.0e-09 66.2 118 33.9
Lsat_1_v5_gn_8_83721 Lactuca sativa HOM05D000558 ORTHO05D006060 2.0e-09 66.2 90 38.9
Psat3g082800 Pisum sativum HOM05D000558 ORTHO05D006060 2.7e-09 65.9 90 38.9
BcaC07g40104 Brassica carinata HOM05D000558 ORTHO05D006060 3.5e-09 65.5 90 35.6
Solyc01g056720.4 Solanum lycopersicum HOM05D000558 ORTHO05D006060 6.0e-09 64.7 98 34.7
Os03g0320000 Oryza sativa ssp. japonica HOM05D000558 ORTHO05D006060 1.0e-08 63.9 92 38.0
Zm00001eb015230 Zea mays HOM05D000558 ORTHO05D006060 1.7e-08 63.2 92 37.0
Nn7g37156 Nelumbo nucifera HOM05D000558 ORTHO05D006060 5.0e-08 61.6 111 34.2
SGA_v2.0_scaffold66G22317 Striga asiatica HOM05D000558 ORTHO05D006060 2.5e-07 59.3 115 29.6
SEGI_10661 Sequoiadendron giganteum HOM05D000558 ORTHO05D006060 4.3e-07 58.5 91 34.1
SEGI_31063 Sequoiadendron giganteum HOM05D000558 ORTHO05D006060 1.6e-06 56.6 91 33.0


User provided reference genes

Program Settings