Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 1.3e-171 606.3 294 100.0
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 1.1e-114 417.2 315 66.0
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 5.2e-109 398.3 316 62.7
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 5.9e-105 384.8 249 72.7
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 5.9e-105 384.8 311 63.7
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 2.3e-104 382.9 218 79.8
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.1e-103 380.6 312 63.5
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.1e-103 380.6 301 61.8
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 3.3e-103 379.0 305 63.3
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 9.5e-103 377.5 313 60.4
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 1.2e-102 377.1 306 62.4
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 2.8e-102 375.9 257 70.4
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 3.6e-102 375.6 318 60.7
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 6.1e-102 374.8 246 71.5
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.4e-101 373.6 219 76.7
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 2.3e-101 372.9 312 61.9
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 4.0e-101 372.1 303 61.1
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 6.8e-101 371.3 248 70.2
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 6.8e-101 371.3 248 70.2
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.2e-100 370.5 233 72.1
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 1.5e-100 370.2 286 64.7
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.5e-100 370.2 312 59.6
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 2.0e-100 369.8 314 62.1
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.4e-100 368.6 255 67.5
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.3e-99 367.1 219 74.4
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.7e-99 366.7 237 70.9
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.2e-99 366.3 251 68.9
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 2.2e-99 366.3 258 68.2
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 3.7e-99 365.5 305 61.0
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 4.9e-99 365.2 265 65.3
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 6.4e-99 364.8 219 74.4
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 6.4e-99 364.8 300 63.7
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 1.1e-98 364.0 250 68.4
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.8e-98 363.2 221 74.2
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 3.2e-98 362.5 224 72.3
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 3.2e-98 362.5 313 59.7
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 4.1e-98 362.1 249 68.3
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 5.4e-98 361.7 221 73.3
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 7.0e-98 361.3 219 73.5
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 9.2e-98 360.9 225 74.2
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 9.2e-98 360.9 315 58.1
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 1.2e-97 360.5 223 74.0
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 2.0e-97 359.8 255 66.7
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 2.0e-97 359.8 310 60.6
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 5.9e-97 358.2 251 67.3
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.0e-96 357.5 223 73.5
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.9e-96 355.5 223 73.1
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 3.9e-96 355.5 319 57.1
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.9e-96 355.5 223 74.4
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 6.6e-96 354.8 245 69.8
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 8.6e-96 354.4 239 69.9
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 8.6e-96 354.4 319 57.4
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 1.1e-95 354.0 217 73.3
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 1.5e-95 353.6 252 65.9
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 1.5e-95 353.6 224 73.7
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 1.9e-95 353.2 308 61.0
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 2.5e-95 352.8 219 72.1
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 5.6e-95 351.7 212 74.1
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 7.3e-95 351.3 208 74.0
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 1.2e-94 350.5 273 62.3
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.6e-94 350.1 239 68.2
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.6e-94 350.1 267 63.7
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.8e-94 349.4 209 78.0
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 2.8e-94 349.4 258 64.0
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 4.7e-94 348.6 327 56.9
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 4.7e-94 348.6 225 73.3
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 4.7e-94 348.6 247 66.0
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 4.7e-94 348.6 295 60.7
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.2e-94 348.2 223 71.7
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 8.0e-94 347.8 217 72.4
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 8.0e-94 347.8 216 75.0
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.0e-93 347.4 284 59.5
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 1.4e-93 347.1 258 65.9
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.4e-93 347.1 253 65.6
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.5e-92 343.6 215 74.0
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.5e-92 343.6 240 67.5
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 2.0e-92 343.2 268 61.6
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 2.0e-92 343.2 311 58.5
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 4.4e-92 342.0 244 66.8
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 5.8e-92 341.7 286 57.0
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 9.8e-92 340.9 213 71.8
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 1.3e-91 340.5 316 55.1
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.3e-91 340.5 340 52.9
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.7e-91 340.1 272 62.5
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 2.2e-91 339.7 317 53.0
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 3.7e-91 339.0 226 70.4
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 6.4e-91 338.2 323 54.5
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 8.3e-91 337.8 259 63.3
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.1e-90 337.4 267 61.0
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 4.1e-90 335.5 294 58.5
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 9.2e-90 334.3 189 76.2
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 1.2e-89 334.0 240 65.8
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 1.2e-89 334.0 268 61.6
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 2.0e-89 333.2 240 65.8
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 2.0e-89 333.2 298 54.4
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 1.7e-88 330.1 217 68.2
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 8.6e-88 327.8 262 61.8
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 1.9e-87 326.6 335 51.3
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.9e-87 326.6 262 61.5
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.9e-87 326.6 262 61.5
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 7.3e-87 324.7 229 68.1
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 3.6e-86 322.4 308 53.9
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.2e-86 321.6 290 55.9
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 6.2e-86 321.6 219 66.7
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 3.1e-85 319.3 254 59.4
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 1.5e-84 317.0 262 59.9
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 3.7e-83 312.4 398 44.2
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 4.1e-82 308.9 217 66.8
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.1e-78 296.6 281 55.2
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.8e-77 293.5 220 63.6
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 7.1e-74 281.6 288 50.3
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.5e-73 279.3 182 70.9
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.3e-72 276.6 193 67.9
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 1.5e-71 273.9 205 64.4
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.8e-70 269.6 277 51.3
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 1.9e-66 256.9 290 48.3
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 3.5e-65 252.7 249 53.4
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 3.5e-65 252.7 212 58.0
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.7e-64 248.1 225 54.2
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.3e-62 244.2 223 56.5
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 1.8e-61 240.4 165 67.9
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 5.3e-61 238.8 255 50.2
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 5.8e-60 235.3 122 80.3
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 5.1e-56 222.2 125 75.2
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 8.7e-56 221.5 206 55.8
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 2.1e-54 216.9 182 61.0
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 8.1e-54 214.9 167 58.1
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.0e-53 212.6 126 72.2
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.6e-52 208.4 136 68.4
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 8.1e-46 188.3 192 52.1
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 1.1e-45 188.0 127 64.6
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 2.4e-45 186.8 274 42.0
CDE06G2699 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 1.6e-41 174.1 112 80.4
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 4.8e-38 162.5 181 43.6
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.0e-32 144.8 99 67.7
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 2.2e-30 137.1 93 66.7
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.5e-26 122.5 133 49.6
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 4.7e-17 92.8 120 46.7
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.3e-15 86.7 69 63.8
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 7.7e-12 75.5 74 52.7
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 4.7e-09 66.2 63 57.1
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-08 64.7 32 81.2
Eucgr.H04277 Eucalyptus grandis HOM05D005134 ORTHO05D194288 1.5e-07 61.2 163 32.5


User provided reference genes

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