Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 2.0e-103 379.4 234 100.0
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.7e-62 243.4 150 82.7
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 1.9e-61 240.0 151 81.5
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.6e-60 236.9 150 81.3
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.6e-60 236.9 150 81.3
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.6e-60 236.9 150 81.3
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 2.7e-60 236.1 149 82.6
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 6.0e-60 235.0 150 79.3
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 7.9e-60 234.6 150 78.7
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 1.0e-59 234.2 150 80.0
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 1.3e-59 233.8 146 82.2
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.3e-59 233.8 146 82.2
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.8e-59 233.4 150 78.7
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 2.3e-59 233.0 149 84.6
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 3.0e-59 232.6 146 81.5
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 3.9e-59 232.3 149 80.5
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 3.9e-59 232.3 149 80.5
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 3.9e-59 232.3 149 79.9
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 3.9e-59 232.3 149 79.2
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.9e-59 232.3 150 78.7
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.9e-59 232.3 150 78.7
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 3.9e-59 232.3 149 79.9
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 5.1e-59 231.9 150 79.3
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 5.1e-59 231.9 151 79.5
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 6.7e-59 231.5 146 81.5
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 6.7e-59 231.5 149 79.2
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 1.1e-58 230.7 149 79.2
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 1.5e-58 230.3 149 78.5
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 1.9e-58 229.9 150 78.7
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 2.5e-58 229.6 150 80.0
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 3.3e-58 229.2 150 78.0
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 3.3e-58 229.2 149 78.5
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 3.3e-58 229.2 150 78.0
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 4.3e-58 228.8 150 78.0
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 4.3e-58 228.8 150 78.0
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 5.7e-58 228.4 150 76.0
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 7.4e-58 228.0 150 78.7
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 7.4e-58 228.0 150 77.3
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 9.6e-58 227.6 149 79.2
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.3e-57 227.3 237 58.2
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 1.6e-57 226.9 150 76.7
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 2.1e-57 226.5 150 76.0
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 2.8e-57 226.1 149 77.2
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 3.7e-57 225.7 149 78.5
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 3.7e-57 225.7 147 82.3
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 3.7e-57 225.7 153 74.5
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.1e-56 224.2 148 81.1
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.1e-56 224.2 148 81.1
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 1.4e-56 223.8 149 77.2
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 1.8e-56 223.4 150 76.7
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 2.4e-56 223.0 150 80.7
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 2.4e-56 223.0 163 74.2
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 3.1e-56 222.6 149 77.2
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 4.1e-56 222.2 150 76.0
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 4.1e-56 222.2 150 76.0
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 4.1e-56 222.2 150 76.7
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 5.3e-56 221.9 150 76.0
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 5.3e-56 221.9 153 76.5
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 2.0e-55 219.9 150 75.3
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 3.4e-55 219.2 150 74.7
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 2.5e-53 213.0 150 72.0
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 7.2e-53 211.5 150 74.0
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 9.3e-53 211.1 150 71.3
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 1.6e-52 210.3 150 70.7
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 2.1e-52 209.9 146 73.3
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.0e-51 207.6 150 77.3
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 2.3e-51 206.5 143 74.1
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 5.1e-51 205.3 150 70.7
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 5.1e-51 205.3 150 70.0
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 5.1e-51 205.3 150 76.7
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 8.7e-51 204.5 150 69.3
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.1e-50 204.1 150 70.0
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 1.1e-50 204.1 150 70.0
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 1.1e-50 204.1 150 70.0
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.1e-50 204.1 150 70.0
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 1.1e-50 204.1 150 70.0
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 1.9e-50 203.4 150 69.3
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 9.7e-50 201.1 150 69.3
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 9.7e-50 201.1 148 74.3
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.8e-49 199.5 150 69.3
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 2.8e-49 199.5 150 69.3
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 3.7e-49 199.1 146 69.9
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 3.7e-49 199.1 150 68.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.1e-48 197.6 112 95.5
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.1e-48 197.6 149 74.5
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.1e-48 197.6 150 68.0
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 1.8e-48 196.8 134 76.1
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.1e-48 196.1 199 56.3
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 1.0e-46 191.0 174 60.3
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.7e-46 190.3 147 66.7
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 2.2e-46 189.9 178 58.4
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 3.6e-44 182.6 134 77.6
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 4.6e-44 182.2 150 64.7
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 6.1e-44 181.8 118 80.5
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 6.7e-43 178.3 149 63.1
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 1.3e-41 174.1 148 63.5
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 6.3e-41 171.8 149 61.7
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 1.5e-39 167.2 171 55.6
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.2e-28 131.0 108 63.9
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.2e-28 131.0 108 63.9
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 1.5e-26 124.0 93 74.2
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 1.1e-24 117.9 124 54.8
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.1e-21 107.8 96 60.4
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 1.4e-19 100.9 146 41.1
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 6.8e-19 98.6 50 90.0
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 3.7e-17 92.8 171 31.6
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.1e-16 91.3 46 91.3
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.8e-16 90.5 78 66.7
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 2.4e-16 90.1 79 64.6
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.2e-15 87.8 78 64.1
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 1.6e-15 87.4 69 68.1
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 4.5e-15 85.9 61 70.5
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 3.8e-14 82.8 45 82.2
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.2e-12 77.8 45 73.3
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.6e-12 77.4 64 64.1
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 3.4e-10 69.7 40 87.5
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 7.5e-10 68.6 51 72.5
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.8e-08 63.9 32 84.4
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 5.4e-08 62.4 64 56.2
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 9.2e-08 61.6 47 70.2
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 3.8e-06 56.2 35 74.3


User provided reference genes

Program Settings