Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.8e-105 386.0 199 100.0
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.1e-62 243.8 200 60.0
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 1.8e-60 236.5 200 58.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 1.8e-60 236.5 200 58.0
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 3.9e-60 235.3 197 58.9
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 3.9e-60 235.3 200 58.0
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 8.8e-60 234.2 198 59.6
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 8.8e-60 234.2 197 57.9
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.5e-59 233.4 197 57.9
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 4.4e-59 231.9 199 55.8
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 1.7e-58 229.9 197 56.9
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.2e-58 229.6 197 58.4
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 4.8e-58 228.4 197 56.9
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 6.3e-58 228.0 200 57.5
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 8.2e-58 227.6 197 55.3
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 1.4e-57 226.9 197 55.3
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 6.9e-57 224.6 197 58.4
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 6.9e-57 224.6 197 56.3
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 6.9e-57 224.6 198 58.1
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 1.2e-56 223.8 197 58.9
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 1.5e-56 223.4 200 56.0
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 1.5e-56 223.4 200 56.5
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.4e-56 222.2 200 56.5
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 1.3e-55 220.3 198 54.5
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 1.7e-55 219.9 197 55.8
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.2e-55 219.5 200 56.0
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 8.5e-55 217.6 197 53.3
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 1.4e-54 216.9 200 55.5
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 2.5e-54 216.1 199 52.3
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.2e-54 215.7 198 53.0
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 4.2e-54 215.3 197 55.3
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 4.2e-54 215.3 184 57.6
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 5.5e-54 214.9 198 53.0
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 9.4e-54 214.2 198 52.5
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 9.4e-54 214.2 179 59.8
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 4.7e-53 211.8 199 54.8
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 4.7e-53 211.8 184 55.4
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 6.1e-53 211.5 198 54.5
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 7.9e-53 211.1 184 56.0
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 7.9e-53 211.1 202 55.9
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.4e-52 210.3 196 50.0
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 1.4e-52 210.3 205 51.7
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 1.8e-52 209.9 197 51.8
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.8e-52 209.9 199 53.8
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 3.9e-52 208.8 198 53.0
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 6.7e-52 208.0 202 55.0
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.6e-51 206.1 184 53.8
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 5.7e-51 204.9 197 54.3
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 5.7e-51 204.9 198 52.5
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 5.7e-51 204.9 200 53.0
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 1.7e-50 203.4 203 51.2
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.2e-50 203.0 185 54.1
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 8.2e-50 201.1 203 51.2
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 2.4e-49 199.5 187 54.0
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.1e-49 199.1 196 53.1
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.1e-49 199.1 185 53.5
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 3.1e-49 199.1 184 52.7
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 1.2e-48 197.2 196 52.0
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 2.6e-48 196.1 196 51.5
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 3.5e-48 195.7 197 48.2
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 7.7e-48 194.5 236 43.2
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 1.3e-47 193.7 199 50.8
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 2.2e-47 193.0 206 50.5
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 2.9e-47 192.6 184 52.7
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 2.9e-47 192.6 199 48.2
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.5e-46 190.3 197 46.7
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 3.2e-46 189.1 167 55.7
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 3.2e-46 189.1 199 46.2
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 4.2e-46 188.7 190 50.5
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.5e-46 188.3 184 53.3
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 7.2e-46 188.0 197 47.2
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.2e-45 187.2 197 49.7
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 2.1e-45 186.4 162 58.0
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 3.6e-45 185.7 187 52.9
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 1.0e-44 184.1 199 46.7
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 1.0e-44 184.1 199 47.7
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.0e-44 184.1 199 48.7
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 1.4e-44 183.7 197 46.2
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 4.0e-44 182.2 184 50.5
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 6.7e-44 181.4 199 46.7
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 3.3e-43 179.1 199 44.7
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 9.7e-43 177.6 199 45.7
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 9.7e-43 177.6 232 42.2
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.3e-42 177.2 154 57.1
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 1.4e-41 173.7 199 45.7
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 5.3e-41 171.8 250 42.4
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 1.6e-40 170.2 199 44.7
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.6e-40 170.2 185 49.7
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 2.0e-40 169.9 199 44.7
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 4.2e-38 162.2 205 42.4
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 9.4e-38 161.0 137 62.8
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.6e-37 160.2 184 42.9
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 4.7e-37 158.7 137 56.9
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 3.0e-36 156.0 192 41.7
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 5.2e-36 155.2 197 41.1
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 5.2e-36 155.2 145 53.8
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.4e-35 152.1 169 49.1
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 9.8e-35 151.0 186 46.8
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.3e-34 150.6 158 48.7
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 2.2e-34 149.8 196 40.8
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 3.1e-33 146.0 184 44.6
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 7.0e-33 144.8 156 48.7
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 2.7e-32 142.9 179 51.4
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 8.5e-31 137.9 128 53.1
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 5.2e-28 128.6 146 49.3
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 9.8e-27 124.4 108 55.6
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.2e-26 123.2 119 55.5
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.1e-22 110.9 151 41.1
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.5e-22 110.5 101 59.4
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 4.3e-22 109.0 145 40.7
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 7.3e-22 108.2 190 35.8
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 6.1e-21 105.1 87 63.2
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.4e-20 104.0 153 37.9
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 6.8e-20 101.7 196 29.6
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 6.8e-20 101.7 108 46.3
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 8.9e-20 101.3 102 50.0
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 1.1e-17 94.4 104 45.2
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 2.4e-17 93.2 90 55.6
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 4.1e-17 92.4 84 50.0
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.6e-16 90.5 84 50.0
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 6.8e-12 75.1 61 57.4
MCO04G502 Micromonas commoda HOM05D006640 ORTHO05D008078 1.5e-11 73.9 191 26.2
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 1.6e-08 63.9 72 47.2
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 1.0e-07 61.2 49 57.1
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.1e-06 57.8 47 51.1


User provided reference genes

Program Settings