Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 5.3e-148 527.7 275 100.0
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 1.2e-91 340.5 231 75.8
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 1.7e-90 336.7 239 73.6
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 2.3e-90 336.3 235 74.5
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 3.0e-90 335.9 226 75.7
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 4.3e-89 332.0 224 75.9
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 4.3e-89 332.0 231 74.5
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 9.5e-89 330.9 243 72.4
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 1.1e-87 327.4 231 74.5
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 2.3e-87 326.2 231 75.8
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 3.1e-87 325.9 231 75.3
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 1.5e-86 323.6 227 74.4
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 5.8e-86 321.6 227 74.4
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.3e-85 320.5 229 71.6
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 1.7e-85 320.1 231 72.7
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 3.7e-85 318.9 229 71.6
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 6.4e-85 318.2 222 73.9
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 8.3e-85 317.8 235 73.6
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 1.1e-84 317.4 238 71.0
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.1e-84 317.4 222 73.9
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 3.2e-84 315.8 230 71.3
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 3.2e-84 315.8 236 72.9
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.1e-83 313.2 232 69.8
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.7e-83 312.8 242 69.4
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 4.6e-83 312.0 239 69.0
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 4.6e-83 312.0 230 70.4
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.0e-82 310.8 232 68.5
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.7e-82 310.1 222 72.1
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 3.9e-82 308.9 264 64.4
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 3.9e-82 308.9 222 72.1
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 5.1e-82 308.5 213 74.2
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.1e-81 307.4 231 72.7
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 2.5e-81 306.2 231 72.3
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 7.3e-81 304.7 221 71.0
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 7.3e-81 304.7 298 58.7
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.2e-80 303.9 209 74.2
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 1.6e-80 303.5 231 72.3
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 2.1e-80 303.1 237 67.9
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 3.6e-80 302.4 226 69.0
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 3.6e-80 302.4 231 69.3
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.1e-79 300.8 233 68.2
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 4.0e-79 298.9 209 73.2
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 6.8e-79 298.1 231 67.1
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 8.9e-79 297.7 223 71.3
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 2.6e-78 296.2 217 71.4
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.6e-78 296.2 230 69.6
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 5.8e-78 295.0 225 67.1
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 7.6e-78 294.7 233 67.0
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 9.9e-78 294.3 228 68.9
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 9.9e-78 294.3 310 55.2
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 1.3e-77 293.9 217 71.0
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.3e-77 293.9 217 71.0
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.3e-77 293.9 217 71.0
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.3e-77 293.9 216 71.3
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.7e-77 293.5 217 70.5
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.2e-77 293.1 220 72.3
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 8.4e-77 291.2 229 68.1
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 1.1e-76 290.8 228 68.0
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 2.4e-76 289.7 234 65.8
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 1.6e-75 287.0 225 68.4
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.6e-75 287.0 231 66.7
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 2.1e-75 286.6 228 66.2
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 2.1e-75 286.6 231 66.2
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 2.7e-75 286.2 234 65.4
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 6.0e-75 285.0 234 63.7
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.7e-74 283.5 261 60.5
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 1.7e-74 283.5 229 65.9
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 8.6e-74 281.2 227 67.4
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.1e-73 280.8 224 66.1
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.9e-73 280.0 224 67.9
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 7.3e-73 278.1 222 65.3
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 2.1e-72 276.6 231 65.8
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.8e-72 276.2 231 68.0
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 3.6e-72 275.8 222 65.8
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.1e-71 274.2 230 64.8
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 1.4e-71 273.9 234 64.1
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.8e-71 273.5 222 66.2
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.8e-71 273.5 231 63.2
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.8e-71 273.5 231 64.5
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.8e-71 273.5 222 64.9
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 3.1e-71 272.7 222 65.3
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 3.1e-71 272.7 222 65.3
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 4.0e-71 272.3 235 63.8
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 4.0e-71 272.3 231 64.1
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 6.8e-71 271.6 222 64.9
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 6.8e-71 271.6 226 65.0
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 8.9e-71 271.2 222 66.2
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 4.4e-70 268.9 222 65.3
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 4.4e-70 268.9 197 68.5
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.7e-69 266.9 235 63.0
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 2.2e-69 266.5 224 63.8
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 6.4e-69 265.0 234 64.5
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 8.4e-69 264.6 217 66.4
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 7.1e-68 261.5 233 63.5
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 4.6e-67 258.8 217 65.4
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.0e-66 257.7 217 65.4
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 3.0e-66 256.1 191 72.3
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 6.6e-66 255.0 217 65.4
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.5e-65 253.8 234 59.4
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 4.3e-65 252.3 234 59.0
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.1e-63 247.7 213 64.8
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 1.4e-63 247.3 204 64.7
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 2.6e-62 243.0 228 59.2
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 4.4e-62 242.3 202 64.9
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 1.3e-61 240.7 232 59.5
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 4.9e-61 238.8 198 64.6
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.4e-61 238.0 299 49.2
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 6.0e-59 231.9 263 52.5
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 7.9e-59 231.5 223 61.0
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 7.9e-59 231.5 223 57.8
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 1.5e-57 227.3 163 71.8
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 1.9e-57 226.9 234 55.6
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 3.3e-57 226.1 191 63.4
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 8.1e-56 221.5 222 57.7
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 3.4e-54 216.1 228 50.9
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 4.2e-52 209.1 141 79.4
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 1.1e-49 201.1 207 54.1
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 5.6e-49 198.7 232 48.3
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.0e-46 190.3 197 56.3
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 1.4e-44 184.1 200 54.0
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 2.1e-43 180.3 167 60.5
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 3.9e-42 176.0 128 71.9
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 5.9e-38 162.2 227 39.2
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 1.6e-35 154.1 107 72.0
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 2.3e-34 150.2 106 75.5
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.3e-33 146.4 98 78.6
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 7.7e-30 135.2 117 65.8
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 2.0e-25 120.6 152 42.8
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 1.5e-22 110.9 88 64.8
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 6.5e-21 105.5 79 67.1
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.1e-20 104.8 82 64.6
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.4e-20 104.4 234 30.8
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 1.6e-19 100.9 106 59.4
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 1.4e-15 87.8 52 84.6
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 1.6e-14 84.3 141 39.0
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 7.7e-14 82.0 57 71.9
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 1.3e-13 81.3 65 63.1
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 4.2e-12 76.3 53 75.5
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 6.1e-11 72.4 50 64.0
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.0e-10 71.6 68 50.0
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 1.1e-07 61.6 74 52.7


User provided reference genes

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