Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.7e-266 922.2 470 100.0
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 8.0e-112 408.3 481 47.6
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 2.4e-108 396.7 486 48.8
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.3e-98 363.6 484 45.9
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 3.2e-84 316.6 479 43.6
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.3e-82 311.2 480 43.1
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 2.5e-81 307.0 488 41.0
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.8e-80 303.5 479 40.9
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.8e-80 303.5 479 40.9
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 2.4e-79 300.4 480 41.0
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 8.4e-77 292.0 479 39.2
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.1e-76 291.6 491 39.9
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 5.4e-76 289.3 482 38.6
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.2e-75 288.1 484 39.0
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 3.5e-75 286.6 484 39.3
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 3.0e-74 283.5 484 38.6
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.1e-73 281.6 485 38.6
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.3e-73 280.0 455 38.2
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 5.6e-73 279.3 495 38.6
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 7.3e-73 278.9 484 39.5
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.3e-72 278.1 485 40.0
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.6e-72 277.7 492 39.2
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 8.1e-72 275.4 480 37.5
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 2.4e-71 273.9 489 36.6
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 4.0e-71 273.1 475 36.2
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 5.3e-71 272.7 494 36.4
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 9.0e-71 271.9 488 37.7
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.5e-70 271.2 460 37.8
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 3.4e-70 270.0 450 39.3
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 7.6e-70 268.9 487 36.1
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 9.9e-70 268.5 480 34.8
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.3e-69 268.1 485 38.6
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.2e-69 267.3 485 39.2
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.1e-68 265.0 480 37.5
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.9e-68 264.2 481 34.9
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 3.2e-68 263.5 479 34.2
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.2e-68 263.1 484 38.0
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-67 261.2 482 35.1
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.1e-67 260.8 449 37.9
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 3.5e-67 260.0 488 37.9
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.3e-66 258.1 483 36.9
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.3e-66 258.1 486 34.6
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.3e-66 257.3 482 37.6
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.0e-66 256.9 456 40.8
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 8.7e-66 255.4 473 37.2
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.1e-65 255.0 481 35.3
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.5e-65 254.6 369 40.4
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.5e-65 253.8 446 35.2
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 9.6e-65 251.9 483 38.1
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 3.1e-63 246.9 483 35.6
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 2.0e-62 244.2 482 35.5
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.0e-62 244.2 480 37.7
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 2.0e-62 244.2 475 35.4
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.6e-62 243.8 455 35.4
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 4.5e-62 243.0 429 36.6
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.3e-61 241.5 470 39.6
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.3e-61 241.5 429 35.9
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.2e-61 240.7 429 35.4
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.9e-61 239.6 481 34.9
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.9e-60 237.7 458 34.7
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.4e-60 237.3 335 40.6
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 4.2e-60 236.5 479 35.1
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.2e-60 236.5 470 35.1
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 4.2e-60 236.5 480 35.8
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 9.3e-60 235.3 449 34.3
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.6e-59 234.6 475 33.3
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.7e-59 233.8 486 34.4
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-58 231.5 491 33.2
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 3.0e-58 230.3 462 34.4
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.1e-58 229.6 391 36.3
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.1e-58 229.6 457 34.6
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.1e-58 229.6 334 43.1
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.1e-57 228.4 457 34.1
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.1e-57 228.4 459 34.6
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 1.1e-57 228.4 460 35.0
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 2.5e-57 227.3 478 34.9
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.5e-57 227.3 449 34.1
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.3e-57 226.9 475 34.1
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.3e-57 226.9 476 33.8
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 7.4e-57 225.7 461 35.1
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.3e-56 224.9 333 40.8
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.1e-56 224.2 481 33.3
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.1e-56 224.2 481 33.5
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 2.8e-56 223.8 475 32.8
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.7e-56 223.4 459 33.3
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.7e-56 223.4 501 31.7
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.7e-56 223.4 475 33.7
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.8e-56 223.0 433 37.2
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 6.2e-56 222.6 454 34.4
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 6.2e-56 222.6 488 34.6
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.1e-55 221.9 457 35.2
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 2.4e-55 220.7 459 34.2
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 3.1e-55 220.3 483 32.1
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 4.0e-55 219.9 470 36.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 5.3e-55 219.5 433 36.7
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 6.9e-55 219.2 465 32.3
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 9.0e-55 218.8 477 32.5
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 9.0e-55 218.8 478 33.9
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 9.0e-55 218.8 472 33.5
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 5.8e-54 216.1 464 32.5
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 5.8e-54 216.1 464 32.5
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.7e-53 214.5 472 32.4
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.7e-53 214.5 470 35.3
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 2.2e-53 214.2 428 34.6
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.9e-53 213.8 430 34.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 9.3e-52 208.8 508 32.5
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 9.3e-52 208.8 472 34.3
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.2e-51 208.4 477 31.9
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.1e-51 207.6 428 35.5
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 4.6e-51 206.5 470 31.3
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 7.9e-51 205.7 470 33.8
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.0e-50 205.3 455 33.6
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.8e-50 204.5 469 32.4
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 2.3e-50 204.1 475 31.6
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.1e-50 203.0 428 32.7
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.3e-48 198.4 471 31.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.1e-47 193.7 522 29.7
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.1e-47 193.7 444 33.1
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 4.0e-47 193.4 470 31.1
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 5.0e-45 186.4 506 29.2
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 6.5e-45 186.0 473 32.8
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.4e-44 184.9 343 34.7
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.9e-44 184.5 307 37.1
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 2.5e-44 184.1 274 42.3
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 5.5e-44 183.0 460 28.0
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.8e-42 177.9 369 33.3
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 6.7e-42 176.0 449 33.2
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 4.3e-41 173.3 230 43.5
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 6.3e-40 169.5 475 29.9
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 5.3e-39 166.4 216 44.9
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 7.7e-38 162.5 358 33.0
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 6.5e-37 159.5 350 30.3
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 8.5e-37 159.1 472 29.7
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.2e-36 157.1 220 38.2
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 5.5e-36 156.4 469 31.1
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 7.2e-36 156.0 366 33.3
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 7.2e-36 156.0 364 31.6
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.2e-35 155.2 468 28.4
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 3.6e-35 153.7 366 32.8
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 7.9e-35 152.5 470 28.9
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 7.9e-35 152.5 467 28.9
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 5.1e-34 149.8 242 36.8
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.1e-33 148.7 471 30.1
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.1e-33 148.7 274 40.9
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.5e-33 148.3 225 37.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.5e-33 148.3 225 37.8
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.0e-33 147.9 483 29.4
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.5e-33 147.5 274 39.4
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 3.3e-33 147.1 473 30.2
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.8e-31 141.4 251 39.8
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 9.1e-31 139.0 266 36.5
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.5e-30 138.3 233 35.6
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.4e-30 137.1 466 29.2
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 1.2e-27 128.6 243 37.0
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.6e-27 128.3 209 37.8
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.7e-27 127.5 226 33.2
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.1e-25 122.1 203 35.5
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.3e-25 120.6 193 37.8
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 9.1e-23 112.5 210 34.8
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 8.5e-21 105.9 270 34.4
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 8.0e-19 99.4 252 32.1
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.8e-18 98.2 283 28.6
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 8.8e-18 95.9 257 31.9
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 7.0e-15 86.3 208 33.2
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 2.6e-14 84.3 141 36.2
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.6e-14 84.3 190 30.5
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 2.5e-12 77.8 137 33.6
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 9.4e-12 75.9 185 31.4
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 3.6e-11 73.9 152 32.2
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.0e-10 72.4 270 28.5
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 1.4e-10 72.0 148 30.4
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.4e-07 61.2 213 29.1
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 7.7e-06 56.2 118 31.4


User provided reference genes

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