Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 1.3e-45 186.0 95 100.0
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 8.3e-16 87.0 55 78.2
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 3.1e-15 85.1 52 75.0
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.7e-14 82.0 61 63.9
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 4.5e-14 81.3 52 73.1
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.7e-14 80.5 52 73.1
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.0e-13 80.1 55 72.7
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.3e-13 79.7 60 65.0
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.3e-13 79.7 59 69.5
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.7e-13 79.3 52 76.9
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.3e-13 79.0 55 70.9
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.3e-13 79.0 55 70.9
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.3e-13 79.0 52 75.0
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.9e-13 78.6 49 73.5
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.8e-13 78.2 52 73.1
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 6.5e-13 77.4 59 67.8
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 8.6e-13 77.0 54 70.4
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.1e-12 76.6 46 73.9
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.9e-12 75.9 55 65.5
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.5e-12 75.5 49 77.6
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.5e-12 75.5 55 70.9
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.2e-12 75.1 49 77.6
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 3.2e-12 75.1 48 79.2
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.2e-12 75.1 52 71.2
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 4.2e-12 74.7 44 77.3
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 5.5e-12 74.3 48 75.0
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 5.5e-12 74.3 49 71.4
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 7.2e-12 73.9 46 71.7
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 7.2e-12 73.9 55 69.1
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 7.2e-12 73.9 52 67.3
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 1.2e-11 73.2 65 58.5
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.2e-11 73.2 46 71.7
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.6e-11 72.8 52 67.3
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 2.8e-11 72.0 42 76.2
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.7e-11 71.2 46 71.7
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 6.1e-11 70.9 46 71.7
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 6.1e-11 70.9 51 68.6
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.4e-10 69.7 51 62.7
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 1.4e-10 69.7 49 67.3
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.8e-10 69.3 44 79.5
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.3e-10 68.9 51 64.7
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.3e-10 68.9 44 79.5
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 2.3e-10 68.9 44 79.5
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 3.0e-10 68.6 51 62.7
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 3.0e-10 68.6 56 55.4
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 3.0e-10 68.6 51 62.7
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 3.0e-10 68.6 51 62.7
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 3.0e-10 68.6 51 62.7
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 5.2e-10 67.8 46 63.0
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 5.2e-10 67.8 46 71.7
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 8.8e-10 67.0 46 63.0
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.2e-09 66.6 51 60.8
CAN.G1415.17 Capsicum annuum HOM05D003086 ORTHO05D003347 1.5e-09 66.2 57 61.4
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.5e-09 66.2 48 70.8
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.5e-09 66.2 51 58.8
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.0e-09 65.9 47 68.1
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 2.6e-09 65.5 48 62.5
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.6e-09 65.5 61 55.7
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 3.4e-09 65.1 51 56.9
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 4.4e-09 64.7 51 60.8
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 4.4e-09 64.7 51 60.8
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 5.7e-09 64.3 46 63.0
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 5.7e-09 64.3 47 68.1
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 7.5e-09 63.9 55 58.2
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 7.5e-09 63.9 44 70.5
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 7.5e-09 63.9 47 63.8
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 7.5e-09 63.9 52 67.3
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 9.8e-09 63.5 49 65.3
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 9.8e-09 63.5 46 67.4
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.3e-08 63.2 52 61.5
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 1.3e-08 63.2 45 66.7
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.7e-08 62.8 44 70.5
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 2.2e-08 62.4 43 76.7
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.2e-08 62.4 46 65.2
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 2.8e-08 62.0 46 67.4
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.8e-08 62.0 46 67.4
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.8e-08 62.0 46 67.4
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.8e-08 62.0 46 67.4
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 2.8e-08 62.0 57 54.4
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 2.8e-08 62.0 46 60.9
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 2.8e-08 62.0 47 63.8
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 2.8e-08 62.0 44 65.9
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.7e-08 61.6 46 58.7
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.7e-08 61.6 46 58.7
FAN03G2739 Fragaria x ananassa HOM05D002608 ORTHO05D013420 3.7e-08 61.6 46 69.6
FAN10G1862 Fragaria x ananassa HOM05D037066 ORTHO05D003347 3.7e-08 61.6 46 69.6
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 3.7e-08 61.6 57 54.4
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 4.9e-08 61.2 63 55.6
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 4.9e-08 61.2 57 54.4
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 4.9e-08 61.2 44 65.9
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 4.9e-08 61.2 42 71.4
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 1.4e-07 59.7 51 54.9
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 1.4e-07 59.7 44 63.6
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.4e-07 59.7 44 63.6
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 2.4e-07 58.9 52 55.8
AUR62006063 Chenopodium quinoa HOM05D003086 ORTHO05D003347 2.4e-07 58.9 52 55.8
AUR62035564 Chenopodium quinoa HOM05D003086 ORTHO05D003347 2.4e-07 58.9 52 55.8
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 3.1e-07 58.5 54 53.7
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 5.4e-07 57.8 44 61.4
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 5.4e-07 57.8 46 65.2
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 7.0e-07 57.4 44 61.4
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 7.0e-07 57.4 46 58.7
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.0e-07 57.4 44 63.6
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 7.0e-07 57.4 49 55.1
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 7.0e-07 57.4 47 61.7
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 9.2e-07 57.0 44 59.1
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 9.2e-07 57.0 45 55.6
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 9.2e-07 57.0 48 58.3
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.2e-06 56.6 44 63.6
Gohir.D11G015350 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.2e-06 56.6 45 60.0
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.2e-06 56.6 44 63.6
Gorai.007G015800 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.2e-06 56.6 45 60.0
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 1.2e-06 56.6 75 45.3
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 1.2e-06 56.6 48 56.2
Prupe.2G191800 Prunus persica HOM05D014299 ORTHO05D017012 1.2e-06 56.6 48 60.4
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 1.6e-06 56.2 41 65.9
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.6e-06 56.2 44 59.1
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.6e-06 56.2 44 63.6
FAN01G2353 Fragaria x ananassa HOM05D037066 ORTHO05D003347 1.6e-06 56.2 43 69.8
Gohir.A09G186001 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.6e-06 56.2 45 62.2
Gohir.D09G180500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.6e-06 56.2 45 62.2
Gorai.006G202500 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.6e-06 56.2 45 62.2
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 2.0e-06 55.8 42 59.5
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.7e-06 55.5 46 56.5
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.7e-06 55.5 46 56.5
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.7e-06 55.5 47 57.4
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 2.7e-06 55.5 44 59.1
MD01G1084100 Malus domestica HOM05D014299 ORTHO05D017012 2.7e-06 55.5 47 57.4
FAN10G1789 Fragaria x ananassa HOM05D037066 ORTHO05D003347 3.5e-06 55.1 46 65.2
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 3.5e-06 55.1 51 51.0
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 3.5e-06 55.1 51 51.0
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 3.5e-06 55.1 39 59.0
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 4.5e-06 54.7 51 49.0
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 4.5e-06 54.7 51 49.0
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 5.9e-06 54.3 45 55.6
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 5.9e-06 54.3 45 55.6
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 5.9e-06 54.3 45 55.6
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 5.9e-06 54.3 45 55.6
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 5.9e-06 54.3 45 55.6
Gohir.A11G015250 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.9e-06 54.3 43 60.5
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 5.9e-06 54.3 46 60.9
Zm00001eb259280 Zea mays HOM05D003086 ORTHO05D003347 7.8e-06 53.9 51 56.9
Zm00001eb268340 Zea mays HOM05D028875 ORTHO05D003347 7.8e-06 53.9 56 48.2


User provided reference genes

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