Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1931.8 973 100.0
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1793.5 974 93.7
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1518.1 893 84.1
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1502.3 943 80.1
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1500.0 905 81.9
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 892 83.1
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 907 82.8
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 916 81.7
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1497.6 917 81.0
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1496.1 893 83.2
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1493.4 893 82.3
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1493.0 909 81.7
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1491.5 892 82.5
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1491.1 891 82.6
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1489.9 914 81.7
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1488.8 914 81.3
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 894 82.2
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1487.6 914 81.3
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1485.3 905 82.0
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1484.2 893 82.5
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1480.3 893 82.2
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 892 82.4
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 893 82.0
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 907 80.8
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 890 82.0
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1474.9 893 81.5
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1474.1 893 81.5
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1474.1 901 80.2
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 890 81.6
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1472.6 953 77.5
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1471.4 899 81.1
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1471.1 920 80.1
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1470.7 898 80.3
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 910 80.1
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 899 80.0
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1468.0 893 81.2
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1467.6 909 80.5
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 891 81.0
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 892 81.8
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 914 79.3
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 898 80.4
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 904 79.6
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1461.8 896 80.7
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1461.4 891 80.7
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1461.0 892 81.3
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1460.3 899 80.4
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 891 81.1
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1459.1 961 75.8
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1458.0 895 80.2
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1456.8 893 80.3
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1453.3 891 80.5
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1450.3 892 79.8
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1449.5 945 76.8
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1448.3 893 79.7
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1446.4 891 79.3
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1443.7 896 79.2
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1441.8 861 82.6
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1440.6 891 78.7
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1440.2 891 79.7
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1437.9 896 79.7
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1437.2 875 81.1
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1436.8 890 79.0
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1435.6 891 79.2
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1435.2 892 78.5
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1434.1 893 78.9
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1434.1 888 78.8
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1433.7 889 80.2
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1433.3 891 78.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1433.3 890 78.8
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1428.7 965 75.3
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1428.3 879 80.8
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1427.5 892 78.1
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1427.2 902 77.6
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1427.2 902 77.6
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1425.6 874 80.0
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1424.8 870 80.6
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1423.7 891 78.5
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1422.5 875 79.5
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1422.5 860 81.6
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1422.1 933 75.8
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1421.8 902 77.4
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1418.7 893 78.5
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1417.9 917 76.8
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1417.5 897 78.6
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1416.7 893 78.3
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1416.4 893 78.3
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1416.4 893 78.3
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1416.0 891 78.6
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1416.0 893 78.3
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1415.6 902 77.1
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1414.1 890 78.2
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1414.1 874 79.4
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1413.7 890 78.1
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1413.3 869 79.7
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1412.9 891 78.0
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1412.1 890 78.2
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1409.8 890 77.8
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1408.7 890 78.2
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1408.7 888 79.5
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1407.1 900 77.7
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1403.7 894 77.9
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1401.0 890 77.9
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1399.8 920 75.9
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1399.4 906 76.5
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1393.3 892 76.3
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1390.2 895 77.2
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1387.1 861 78.3
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1382.5 913 74.5
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1382.1 872 78.0
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1378.2 918 74.0
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1376.3 894 77.6
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1364.7 978 71.8
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1361.7 904 73.6
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1357.4 877 76.3
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1353.6 902 75.2
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1337.0 887 75.1
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1327.4 899 74.2
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1311.6 789 81.6
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1307.4 920 71.8
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1306.2 840 76.8
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1300.4 889 74.4
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1299.6 896 72.5
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1290.0 820 76.8
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1268.4 820 77.6
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1256.9 903 73.3
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1240.7 898 71.3
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1223.0 735 82.0
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1208.7 892 69.1
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1197.6 747 78.7
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1168.3 903 64.7
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1163.7 874 66.0
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1162.9 796 73.6
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1154.8 902 65.4
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 1.7e-302 1042.7 648 79.0
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 9.5e-301 1036.9 900 58.8
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.8e-283 979.5 598 79.9
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 2.1e-260 902.9 549 80.0
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 4.2e-256 888.6 926 53.0
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.1e-208 731.1 462 78.1
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.7e-207 725.7 438 81.3
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.3e-204 715.3 522 70.7
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.5e-184 650.2 468 70.5
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 6.2e-183 645.6 406 79.6
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.6e-178 630.9 761 47.0
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 7.9e-154 548.9 484 59.5
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 9.0e-150 535.4 352 76.4
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 5.3e-126 456.4 313 72.5
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 2.6e-125 454.1 408 57.4
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.6e-106 390.6 440 49.5
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 5.7e-96 356.7 335 57.0
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 2.4e-86 324.7 212 77.4
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 8.9e-81 306.2 283 58.7
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 6.6e-60 236.9 244 55.7
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 8.9e-57 226.5 151 72.2
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 1.5e-56 225.7 233 53.2
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 7.6e-48 196.8 119 80.7
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 9.9e-40 169.9 268 42.2
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 6.7e-36 157.1 119 63.0
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.3e-31 142.9 85 78.8
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 3.2e-30 138.3 83 81.9
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.8e-28 132.5 81 79.0
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.1e-25 123.2 90 63.3
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 1.1e-22 113.2 130 53.1
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.6e-21 109.4 460 25.7
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 6.3e-18 97.4 112 48.2
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 3.1e-17 95.1 56 75.0
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 3.8e-15 88.2 60 66.7
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 6.1e-13 80.9 59 72.9
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 9.7e-11 73.6 51 68.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-10 73.2 49 71.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 3.1e-09 68.6 36 83.3
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 4.1e-09 68.2 42 76.2
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.7e-07 62.8 43 65.1
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 5.0e-07 61.2 110 38.2


User provided reference genes

Program Settings