Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 1.9e-147 525.8 257 100.0
CDE05G0673 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 1.5e-75 287.0 162 89.5
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 2.9e-71 272.7 263 51.7
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 6.4e-71 271.6 233 54.9
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 2.7e-69 266.2 263 52.9
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 1.3e-68 263.8 265 52.8
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 2.3e-68 263.1 243 52.7
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 2.8e-66 256.1 243 53.1
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 9.9e-64 247.7 249 51.4
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 9.9e-64 247.7 249 51.4
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 2.2e-63 246.5 226 52.2
COL.COLO4_31635 Corchorus olitorius HOM05D005683 ORTHO05D006958 4.9e-63 245.4 232 53.9
Nn1g03823 Nelumbo nucifera HOM05D005683 ORTHO05D006958 4.9e-63 245.4 264 50.0
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 1.1e-62 244.2 230 50.9
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 1.1e-62 244.2 236 53.8
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 1.4e-62 243.8 233 52.8
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 1.4e-62 243.8 227 52.4
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 1.9e-62 243.4 219 53.4
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 2.4e-62 243.0 241 51.5
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 2.4e-62 243.0 223 52.5
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 1.2e-61 240.7 242 50.8
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 1.6e-61 240.4 215 54.4
Lj2A278T71 Lonicera japonica HOM05D005683 ORTHO05D006958 2.1e-61 240.0 239 50.2
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 4.6e-61 238.8 223 53.4
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 1.3e-60 237.3 273 47.3
MBI02_g46153_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 3.0e-60 236.1 265 49.8
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 3.0e-60 236.1 273 46.2
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 3.9e-60 235.7 235 52.3
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 6.6e-60 235.0 249 50.2
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 6.6e-60 235.0 252 48.0
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 8.7e-60 234.6 239 49.8
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 1.9e-59 233.4 230 51.7
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 2.5e-59 233.0 245 50.6
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 3.3e-59 232.6 225 52.0
FvH4_3g03670 Fragaria vesca HOM05D005683 ORTHO05D006958 4.3e-59 232.3 228 50.9
FAN11G3671 Fragaria x ananassa HOM05D005683 ORTHO05D006958 4.3e-59 232.3 228 50.9
FAN16G0586 Fragaria x ananassa HOM05D005683 ORTHO05D006958 4.3e-59 232.3 228 50.9
FAN25G1197 Fragaria x ananassa HOM05D005683 ORTHO05D006958 5.6e-59 231.9 234 50.4
FAN21G2210 Fragaria x ananassa HOM05D005683 ORTHO05D006958 7.3e-59 231.5 234 50.4
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 1.3e-58 230.7 239 50.2
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 1.3e-58 230.7 246 50.8
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 1.6e-58 230.3 222 51.4
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 4.8e-58 228.8 219 51.6
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 6.2e-58 228.4 215 54.9
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 3.1e-57 226.1 228 53.1
RcHm_v2.0_Chr5g0005711 Rosa chinensis HOM05D005683 ORTHO05D006958 3.1e-57 226.1 234 51.7
Hund23579 Selenicereus undatus HOM05D005683 ORTHO05D006958 3.1e-57 226.1 219 52.5
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 4.0e-57 225.7 238 47.9
CsaV3_6G049570 Cucumis sativus L. HOM05D005683 ORTHO05D006958 6.9e-57 224.9 237 50.2
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 3.4e-56 222.6 250 47.6
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 4.5e-56 222.2 228 50.4
Hund21293 Selenicereus undatus HOM05D005683 ORTHO05D006958 7.6e-56 221.5 215 50.2
Sed0004151 Sechium edule HOM05D005683 ORTHO05D006958 9.9e-56 221.1 214 51.9
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 1.3e-55 220.7 201 52.7
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 1.3e-55 220.7 232 48.3
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 1.7e-55 220.3 199 50.8
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 2.2e-55 219.9 219 50.2
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 2.2e-55 219.9 229 48.0
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 2.2e-55 219.9 259 46.7
ClCG01G022390 Citrullus lanatus HOM05D005683 ORTHO05D006958 2.9e-55 219.5 223 50.2
PGR042G1297 Punica granatum HOM05D005683 ORTHO05D006958 2.9e-55 219.5 223 49.8
Sed0027497 Sechium edule HOM05D005683 ORTHO05D006958 2.9e-55 219.5 210 51.9
MELO3C007336.2 Cucumis melo HOM05D005683 ORTHO05D006958 3.8e-55 219.2 235 48.9
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 6.4e-55 218.4 237 48.5
Oeu021580.1 Olea europaea HOM05D005683 ORTHO05D006958 1.4e-54 217.2 245 45.7
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 3.2e-54 216.1 253 46.2
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 4.2e-54 215.7 247 45.7
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 1.6e-53 213.8 224 48.7
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 2.1e-53 213.4 201 51.2
Cpa.g.sc27.157 Carica papaya HOM05D005683 ORTHO05D006958 7.9e-53 211.5 213 52.6
Gohir.A05G166700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 7.9e-53 211.5 247 47.0
Gohir.D05G169700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 7.9e-53 211.5 247 47.0
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 7.9e-53 211.5 223 48.9
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 1.0e-52 211.1 216 49.5
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 1.3e-52 210.7 267 43.1
AT1G11380 Arabidopsis thaliana HOM05D005683 ORTHO05D006958 1.8e-52 210.3 211 49.3
Gorai.009G174900 Gossypium raimondii HOM05D005683 ORTHO05D006958 2.3e-52 209.9 247 47.0
Thecc.06G202400 Theobroma cacao HOM05D005683 ORTHO05D006958 5.1e-52 208.8 208 50.5
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 6.7e-52 208.4 177 54.2
CANSAT56G4448 Cannabis sativa HOM05D005683 ORTHO05D006958 8.7e-52 208.0 230 47.8
AL1G22470 Arabidopsis lyrata HOM05D005683 ORTHO05D006958 1.1e-51 207.6 211 49.3
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 1.1e-51 207.6 229 48.0
Gohir.A10G019100 Gossypium hirsutum HOM05D005683 ORTHO05D006958 1.5e-51 207.2 211 51.2
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 4.3e-51 205.7 224 49.1
CARHR011620 Cardamine hirsuta HOM05D005683 ORTHO05D006958 9.6e-51 204.5 214 47.7
vmacro15855 Vaccinium macrocarpon HOM05D005683 ORTHO05D006958 1.6e-50 203.8 334 38.3
BcaC05g25012 Brassica carinata HOM05D005683 ORTHO05D006958 4.8e-50 202.2 207 48.8
Gohir.D10G020000 Gossypium hirsutum HOM05D005683 ORTHO05D006958 4.8e-50 202.2 210 50.0
Gorai.011G021200 Gossypium raimondii HOM05D005683 ORTHO05D006958 4.8e-50 202.2 215 48.8
unitig_748.g7566 Utricularia gibba HOM05D005683 ORTHO05D006958 8.1e-50 201.4 215 47.4
Aa31LG1G3330 Aethionema arabicum HOM05D005683 ORTHO05D006958 1.4e-49 200.7 227 44.9
Carub.0001s1101 Capsella rubella HOM05D005683 ORTHO05D006958 1.8e-49 200.3 224 46.0
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 3.1e-49 199.5 207 48.8
Lsat_1_v5_gn_7_20320 Lactuca sativa HOM05D005683 ORTHO05D006958 3.1e-49 199.5 223 47.5
A06p08000 Brassica napus HOM05D005683 ORTHO05D006958 4.0e-49 199.1 207 48.3
BolC5t29702H Brassica oleracea HOM05D005683 ORTHO05D006958 4.0e-49 199.1 207 48.3
BraA06t23999Z Brassica rapa HOM05D005683 ORTHO05D006958 4.0e-49 199.1 207 48.3
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 6.9e-49 198.4 240 46.2
C05p09600 Brassica napus HOM05D005683 ORTHO05D006958 9.0e-49 198.0 207 48.3
Lj1A1216T22 Lonicera japonica HOM05D005683 ORTHO05D006958 9.0e-49 198.0 205 48.3
THA.LOC104818970 Tarenaya hassleriana HOM05D005683 ORTHO05D006958 9.0e-49 198.0 205 49.3
Lj4g0024466 Lotus japonicus HOM05D005683 ORTHO05D006958 1.2e-48 197.6 244 45.1
Glyma.07G188900 Glycine max HOM05D005683 ORTHO05D006958 2.0e-48 196.8 263 43.7
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 3.4e-48 196.1 229 47.6
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 4.5e-48 195.7 229 46.3
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 7.6e-48 194.9 229 46.3
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 1.3e-47 194.1 236 41.9
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 2.2e-47 193.4 221 43.9
arahy.Tifrunner.gnm1.ann1.NC80VA Arachis hypogaea HOM05D005683 ORTHO05D006958 3.5e-45 186.0 247 42.1
arahy.Tifrunner.gnm1.ann1.B3SD72 Arachis hypogaea HOM05D005683 ORTHO05D006958 2.3e-44 183.3 247 41.7
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 3.9e-44 182.6 234 44.9
Migut.M01228 Erythranthe guttata HOM05D005683 ORTHO05D006958 9.6e-43 177.9 226 43.4
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 2.8e-42 176.4 204 47.1
EL10Ac8g19981 Beta vulgaris HOM05D005683 ORTHO05D006958 5.8e-40 168.7 224 42.4
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 1.3e-39 167.5 258 40.3
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 2.2e-39 166.8 144 54.9
AUR62014686 Chenopodium quinoa HOM05D005683 ORTHO05D006958 4.6e-37 159.1 199 43.7
Duzib235G0662 Durio zibethinus HOM05D005683 ORTHO05D006958 4.3e-35 152.5 240 37.5
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 5.7e-35 152.1 176 45.5
Duzib192G0920 Durio zibethinus HOM05D005683 ORTHO05D006958 4.8e-34 149.1 208 40.4
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 6.9e-33 145.2 130 50.0
Glyma.08G060400 Glycine max HOM05D005683 ORTHO05D006958 1.3e-31 141.0 132 52.3
TAR629G2478 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.7e-31 140.6 162 45.7
CSS0013141 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 2.9e-31 139.8 196 40.8
Pp3c18_19760 Physcomitrium patens HOM05D005683 ORTHO05D006958 7.9e-29 131.7 155 39.4
Pp3c21_1800 Physcomitrium patens HOM05D005683 ORTHO05D006958 1.9e-27 127.1 199 34.2
Sp1g10010 Schrenkiella parvula HOM05D005683 ORTHO05D006958 2.1e-13 80.5 99 43.4
Prupe.5G244100 Prunus persica HOM05D005683 ORTHO05D006958 7.9e-13 78.6 79 44.3
CBR_g50374 Chara braunii HOM05D005683 ORTHO05D006958 8.2e-10 68.6 171 32.2
SGA_v2.0_scaffold42G16089 Striga asiatica HOM05D005683 ORTHO05D006958 1.4e-09 67.8 153 31.4
Psat1g209520 Pisum sativum HOM05D005683 ORTHO05D006958 1.3e-07 61.2 82 42.7
PGR142G2279 Punica granatum HOM05D000414 ORTHO05D000276 1.7e-07 60.8 145 31.7
RhsimUnG0114100 Rhododendron simsii HOM05D000414 ORTHO05D000276 5.0e-07 59.3 131 32.1
Medtr5g008240 Medicago truncatula HOM05D000414 ORTHO05D000276 1.1e-06 58.2 130 30.8
Psat2g187400 Pisum sativum HOM05D000414 ORTHO05D000276 1.5e-06 57.8 156 29.5
RhsimUnG0022300 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.9e-06 57.4 129 31.8
SGA_v2.0_scaffold66G22366 Striga asiatica HOM05D000414 ORTHO05D000276 1.9e-06 57.4 123 30.9
Phvul.002G036700 Phaseolus vulgaris HOM05D000414 ORTHO05D000276 2.5e-06 57.0 130 31.5
Ah.02g123270 Amaranthus hybridus HOM05D000212 ORTHO05D002824 3.2e-06 56.6 144 27.8
DCAR_007094 Daucus carota HOM05D000198 ORTHO05D000763 3.2e-06 56.6 127 33.9
Migut.J01600 Erythranthe guttata HOM05D000414 ORTHO05D000276 3.2e-06 56.6 123 32.5
Gohir.A09G177850 Gossypium hirsutum HOM05D000414 ORTHO05D000276 3.2e-06 56.6 142 31.0
CBR_g51437 Chara braunii HOM05D000414 ORTHO05D006958 4.2e-06 56.2 176 28.4
Gohir.D09G173400 Gossypium hirsutum HOM05D000414 ORTHO05D000276 4.2e-06 56.2 142 31.0
Haze_17268 Corylus avellana HOM05D000212 ORTHO05D002824 7.2e-06 55.5 154 26.6
Eucgr.K01555 Eucalyptus grandis HOM05D000414 ORTHO05D000276 9.4e-06 55.1 123 30.9
HPP92_012010 Vanilla planifolia HOM05D002715 ORTHO05D002996 9.4e-06 55.1 143 28.0


User provided reference genes

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