Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.0e-125 453.4 217 100.0
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.6e-75 286.6 212 62.7
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 5.2e-74 281.6 215 60.5
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 6.8e-74 281.2 204 61.8
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.4e-73 278.9 196 61.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.3e-72 276.9 207 59.4
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.2e-72 276.2 200 60.5
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 2.9e-72 275.8 207 59.4
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 4.9e-72 275.0 205 60.5
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 8.3e-72 274.2 211 57.8
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.1e-71 273.9 199 60.8
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.4e-71 273.5 212 58.0
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.6e-70 270.0 202 57.4
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 3.5e-70 268.9 208 57.7
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 4.6e-70 268.5 199 60.8
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 6.0e-70 268.1 212 59.0
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 6.0e-70 268.1 216 56.0
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 6.0e-70 268.1 216 56.5
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 6.0e-70 268.1 217 54.4
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 1.7e-69 266.5 200 57.5
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.7e-69 266.5 205 59.5
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 2.3e-69 266.2 214 55.6
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 3.0e-69 265.8 212 57.1
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 3.0e-69 265.8 217 54.8
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 5.1e-69 265.0 215 57.2
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 6.6e-69 264.6 213 56.8
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 8.6e-69 264.2 212 56.1
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 8.6e-69 264.2 214 58.9
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.1e-68 263.8 204 57.8
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 7.3e-68 261.2 212 55.2
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.2e-67 260.4 196 60.2
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.6e-67 260.0 239 54.0
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.1e-67 259.6 215 53.5
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.1e-67 259.6 195 56.9
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.1e-67 259.6 208 53.8
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.1e-67 259.6 204 57.8
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 2.1e-67 259.6 218 54.1
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 3.6e-67 258.8 204 58.3
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.2e-67 258.1 202 59.4
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 6.2e-67 258.1 212 58.0
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 8.1e-67 257.7 195 56.9
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 8.1e-67 257.7 207 55.6
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.4e-66 256.9 218 56.0
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.8e-66 256.5 210 55.7
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 4.0e-66 255.4 212 56.6
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 5.2e-66 255.0 218 53.7
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 6.8e-66 254.6 206 57.3
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.0e-65 253.1 208 55.3
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.0e-65 253.1 200 57.0
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.0e-65 253.1 200 56.5
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 3.4e-65 252.3 199 56.3
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 5.8e-65 251.5 207 53.6
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 5.8e-65 251.5 210 53.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 7.6e-65 251.1 196 58.7
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 9.9e-65 250.8 219 53.4
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.7e-64 250.0 217 52.5
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.9e-64 249.2 217 53.0
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 3.8e-64 248.8 203 53.7
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.8e-64 248.8 203 53.7
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 6.4e-64 248.1 218 51.8
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-63 247.3 203 53.7
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.4e-63 246.1 203 55.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 3.2e-63 245.7 207 56.0
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 4.1e-63 245.4 200 54.0
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 5.4e-63 245.0 196 54.1
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 5.4e-63 245.0 196 54.1
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.4e-63 245.0 216 52.8
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 7.1e-63 244.6 216 52.8
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 9.2e-63 244.2 200 53.5
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.2e-62 243.8 189 57.1
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 2.7e-62 242.7 207 53.6
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 3.5e-62 242.3 205 54.1
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.0e-61 240.7 203 53.2
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.0e-61 240.7 203 53.2
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.0e-61 240.7 209 52.2
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 6.6e-61 238.0 203 54.7
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.1e-60 237.3 201 56.2
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.1e-60 237.3 170 61.8
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.9e-60 236.5 196 53.6
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.9e-60 236.5 207 52.7
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-60 236.1 197 52.3
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 4.3e-60 235.3 200 52.5
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 7.3e-60 234.6 206 51.9
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 9.6e-60 234.2 196 53.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-59 233.8 203 52.7
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.2e-59 233.8 196 55.1
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.6e-59 233.4 194 54.6
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.8e-59 232.6 203 52.7
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.8e-59 232.6 203 52.7
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.8e-59 232.6 196 51.5
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 8.1e-59 231.1 207 51.7
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 8.1e-59 231.1 184 56.5
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.8e-58 229.9 200 53.5
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 5.2e-58 228.4 200 52.5
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 6.9e-58 228.0 201 52.7
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.2e-57 227.3 227 49.8
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.2e-57 227.3 206 49.5
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-57 226.9 200 52.0
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 3.4e-57 225.7 178 55.1
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 7.6e-57 224.6 163 60.7
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 4.9e-56 221.9 193 51.8
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 4.9e-56 221.9 196 54.1
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.1e-55 220.7 174 56.3
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.1e-55 220.7 202 52.0
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 1.4e-55 220.3 209 48.8
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.9e-55 219.9 215 47.0
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 7.1e-55 218.0 180 56.1
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.5e-54 215.7 204 49.0
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.0e-54 214.9 225 48.9
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.7e-53 213.4 151 60.9
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.7e-53 213.4 208 48.1
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 3.0e-53 212.6 223 46.6
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.0e-53 212.6 230 46.5
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.5e-52 210.3 193 50.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.9e-52 209.9 221 46.2
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 5.3e-50 201.8 133 63.9
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 5.8e-49 198.4 203 47.8
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 1.3e-48 197.2 185 44.9
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.4e-47 193.7 163 55.8
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 2.7e-46 189.5 192 45.3
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 9.6e-44 181.0 247 40.1
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.6e-43 180.3 245 40.4
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 4.0e-42 175.6 109 67.0
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.2e-41 174.1 200 42.0
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.9e-39 166.8 133 51.9
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 9.3e-39 164.5 108 66.7
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.6e-38 163.7 139 56.1
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.1e-38 163.3 203 41.9
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.8e-37 160.2 201 41.8
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.8e-37 160.2 207 39.6
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.4e-31 140.6 159 44.7
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 3.7e-27 125.9 81 65.4
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.7e-22 109.8 108 45.4
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.9e-20 103.6 67 61.2
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.2e-17 94.4 129 45.0
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.6e-17 93.2 92 51.1
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.7e-16 90.5 62 58.1
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 8.5e-16 88.2 56 66.1
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 8.5e-16 88.2 63 54.0
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.5e-15 86.7 86 46.5
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.9e-13 79.3 85 50.6
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 4.4e-12 75.9 44 63.6
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 7.4e-12 75.1 85 49.4
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 6.3e-11 72.0 50 62.0
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 4.1e-10 69.3 58 50.0
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 9.1e-10 68.2 79 44.3
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 9.1e-10 68.2 53 56.6
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 3.4e-09 66.2 122 33.6
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.9e-08 63.2 31 71.0
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 5.0e-08 62.4 51 54.9
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.4e-07 60.8 52 57.7
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 7.2e-07 58.5 70 47.1
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 2.7e-06 56.6 109 31.2
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 6.1e-06 55.5 26 73.1


User provided reference genes

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