Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.7e-117 426.0 219 100.0
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 4.1e-111 404.8 219 94.5
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 5.6e-92 341.3 216 79.2
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 1.6e-91 339.7 216 77.8
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 8.1e-91 337.4 220 75.9
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 1.1e-90 337.0 220 76.4
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 4.0e-90 335.1 221 77.4
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 5.8e-89 331.3 227 74.4
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 9.9e-89 330.5 220 75.0
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.7e-88 329.7 223 75.8
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.9e-88 328.9 219 73.5
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 6.4e-88 327.8 222 75.7
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 8.4e-88 327.4 218 73.4
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 8.4e-88 327.4 219 74.0
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 1.1e-87 327.0 218 72.9
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.9e-87 326.2 218 73.4
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 4.2e-87 325.1 223 75.8
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 5.4e-87 324.7 216 74.1
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 7.1e-87 324.3 225 74.7
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 7.1e-87 324.3 220 72.7
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 7.1e-87 324.3 216 73.6
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.2e-86 323.6 226 74.3
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 2.1e-86 322.8 215 74.9
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 2.7e-86 322.4 221 73.3
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 2.7e-86 322.4 219 73.1
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.5e-86 322.0 218 72.5
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 3.5e-86 322.0 218 72.9
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.0e-85 320.5 219 74.4
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 1.3e-85 320.1 216 73.6
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 1.7e-85 319.7 222 71.2
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 3.0e-85 318.9 215 75.8
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 5.1e-85 318.2 221 74.2
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 6.6e-85 317.8 213 74.2
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 6.6e-85 317.8 217 73.3
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.1e-84 317.0 219 73.5
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 1.5e-84 316.6 224 71.9
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 1.9e-84 316.2 219 72.6
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 2.5e-84 315.8 215 73.0
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 3.3e-84 315.5 220 70.9
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 3.3e-84 315.5 217 73.3
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 5.6e-84 314.7 215 74.0
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 7.3e-84 314.3 219 72.6
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.6e-83 313.2 222 70.3
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 2.1e-83 312.8 220 70.5
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 2.1e-83 312.8 215 72.6
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 2.8e-83 312.4 220 73.2
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 2.8e-83 312.4 220 71.8
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 3.6e-83 312.0 222 69.8
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 4.8e-83 311.6 220 72.3
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 6.2e-83 311.2 216 71.8
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 6.2e-83 311.2 226 72.1
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 6.2e-83 311.2 220 71.4
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 6.2e-83 311.2 217 70.5
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 1.4e-82 310.1 218 71.6
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 2.4e-82 309.3 222 69.8
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 4.0e-82 308.5 224 69.6
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 6.9e-82 307.8 249 65.9
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 6.9e-82 307.8 207 75.4
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 9.0e-82 307.4 220 70.5
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.2e-81 307.0 227 68.3
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.6e-81 305.8 220 70.5
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 4.5e-81 305.1 220 68.2
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 4.5e-81 305.1 219 69.4
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 7.6e-81 304.3 222 68.5
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 7.6e-81 304.3 226 71.2
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 9.9e-81 303.9 263 62.7
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 1.3e-80 303.5 217 69.6
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.3e-80 303.5 220 69.5
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 1.3e-80 303.5 219 68.5
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 1.3e-80 303.5 216 70.4
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.3e-80 303.5 220 69.5
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 1.7e-80 303.1 218 70.2
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 2.2e-80 302.8 221 67.4
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 2.2e-80 302.8 216 69.9
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 2.9e-80 302.4 220 68.2
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 4.9e-80 301.6 217 68.7
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 4.9e-80 301.6 217 70.0
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 6.4e-80 301.2 229 69.4
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.1e-79 300.4 221 66.5
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 1.1e-79 300.4 221 67.4
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 1.1e-79 300.4 221 67.4
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 1.4e-79 300.1 230 67.8
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.9e-79 299.7 221 67.0
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 3.2e-79 298.9 245 65.3
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 3.2e-79 298.9 221 67.0
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 7.1e-79 297.7 221 66.1
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 7.1e-79 297.7 221 66.1
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 9.3e-79 297.4 221 66.1
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 9.3e-79 297.4 259 62.5
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 1.2e-78 297.0 218 67.9
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 2.7e-78 295.8 227 66.5
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 6.0e-78 294.7 212 72.2
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 7.9e-78 294.3 223 64.6
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 7.9e-78 294.3 218 66.5
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 7.9e-78 294.3 234 65.4
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 2.3e-77 292.7 232 62.9
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 5.1e-77 291.6 216 67.1
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 5.1e-77 291.6 221 67.0
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.6e-75 286.6 225 66.2
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.8e-75 285.8 216 68.5
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 6.2e-75 284.6 171 79.5
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 8.1e-75 284.3 221 64.3
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.4e-74 283.5 253 60.1
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.2e-73 280.4 220 61.8
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.5e-73 280.0 223 65.0
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 2.0e-73 279.6 161 81.4
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.7e-72 276.6 217 65.4
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.9e-72 275.8 161 81.4
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 6.4e-72 274.6 219 62.6
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 5.5e-71 271.6 219 63.5
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 2.3e-69 266.2 211 65.9
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 9.6e-68 260.8 185 71.9
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 2.1e-67 259.6 222 60.8
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.7e-64 250.0 220 61.4
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 2.5e-63 246.1 192 67.7
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.0e-56 224.2 226 56.6
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 2.2e-56 223.0 219 54.8
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 3.2e-55 219.2 229 50.7
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.0e-53 214.2 133 71.4
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 2.3e-53 213.0 122 81.1
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 5.9e-49 198.4 115 79.1
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 3.8e-48 195.7 245 46.9
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 4.2e-47 192.2 236 45.3
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 4.6e-46 188.7 207 50.2
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.0e-40 171.0 171 53.2
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.9e-39 166.8 100 79.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 1.6e-33 147.1 251 35.9
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 8.0e-30 134.8 182 43.4
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 3.0e-29 132.9 249 39.4
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 1.4e-13 80.9 86 57.0
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.2e-12 77.8 43 81.4
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 3.5e-09 66.2 38 76.3
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.3e-08 63.5 38 73.7
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.3e-08 63.5 43 67.4
Cpa.g.sc246.8 Carica papaya HOM05D005618 ORTHO05D118306 3.8e-08 62.8 46 73.9
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 3.3e-07 59.7 37 81.1
QL10p031514 Quercus lobata HOM05D005618 ORTHO05D337805 7.3e-07 58.5 38 78.9
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 9.5e-07 58.2 206 27.7


User provided reference genes

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