Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 8.4e-257 889.8 435 100.0
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.0e-185 653.7 414 74.4
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.3e-185 653.3 415 74.7
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.3e-185 653.3 415 74.2
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.8e-185 651.7 420 73.8
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.1e-184 650.2 415 74.2
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 3.3e-184 648.7 415 73.5
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 4.3e-184 648.3 420 72.4
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.2e-183 646.7 414 73.4
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.8e-183 645.6 417 72.9
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 4.7e-183 644.8 417 72.9
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 4.7e-183 644.8 413 74.3
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.0e-182 643.7 413 72.6
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.3e-182 642.5 414 72.2
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 3.1e-182 642.1 413 74.3
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.1e-182 642.1 415 73.0
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 4.0e-182 641.7 413 73.8
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 4.0e-182 641.7 414 73.9
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 4.0e-182 641.7 417 72.7
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 5.2e-182 641.3 420 72.6
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.8e-182 641.0 420 71.7
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 6.8e-182 641.0 420 71.7
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 6.8e-182 641.0 415 72.3
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.2e-181 640.2 413 72.4
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.2e-181 640.2 414 72.9
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.5e-181 639.8 415 72.0
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 2.0e-181 639.4 415 72.3
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 2.6e-181 639.0 415 72.3
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.4e-181 638.3 417 71.9
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 4.4e-181 638.3 414 72.5
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 5.8e-181 637.9 414 72.0
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 5.8e-181 637.9 415 72.5
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 9.8e-181 637.1 418 70.8
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.3e-180 636.7 417 70.5
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.7e-180 636.3 418 70.8
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.7e-180 636.3 414 72.5
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 2.2e-180 636.0 418 70.6
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.2e-180 636.0 415 71.6
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 2.2e-180 636.0 414 72.2
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 2.9e-180 635.6 419 71.4
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 8.3e-180 634.0 415 72.3
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 8.3e-180 634.0 415 72.5
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.1e-179 633.6 418 70.8
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.1e-179 633.6 419 71.6
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.1e-179 633.6 437 70.5
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.4e-179 633.3 420 71.4
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.9e-179 632.9 420 71.0
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.9e-179 632.9 410 71.5
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.9e-179 632.9 415 73.5
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.9e-179 632.9 420 71.9
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.9e-179 632.9 420 71.0
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 2.4e-179 632.5 417 71.9
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 3.2e-179 632.1 418 70.3
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 3.2e-179 632.1 418 70.6
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 4.1e-179 631.7 417 71.2
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 4.1e-179 631.7 417 71.9
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 7.0e-179 630.9 419 70.6
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 7.0e-179 630.9 415 72.3
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 9.2e-179 630.6 442 68.6
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 9.2e-179 630.6 420 71.4
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.2e-178 630.2 417 71.5
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.6e-178 629.8 415 70.8
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.6e-178 629.8 415 73.3
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.0e-178 629.4 415 72.0
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.0e-178 629.4 415 73.3
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.7e-178 629.0 415 72.3
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 3.5e-178 628.6 415 73.0
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.6e-178 628.2 420 70.2
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.0e-178 627.9 415 70.8
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 6.0e-178 627.9 420 71.4
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 7.8e-178 627.5 415 71.3
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 7.8e-178 627.5 411 72.7
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.0e-177 627.1 420 70.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.0e-177 627.1 420 70.5
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.0e-177 627.1 420 68.6
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.3e-177 626.7 414 71.5
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.7e-177 626.3 420 71.4
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.7e-177 626.3 414 70.8
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.7e-177 626.3 418 70.6
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.7e-177 626.3 413 72.2
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.7e-177 626.3 419 70.2
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 3.9e-177 625.2 416 70.0
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 3.9e-177 625.2 413 71.9
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.5e-176 623.2 414 72.0
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.9e-176 622.9 415 70.8
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.9e-176 622.9 415 70.8
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.5e-176 622.5 429 71.1
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 2.5e-176 622.5 411 72.3
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.3e-176 621.7 417 70.3
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 4.3e-176 621.7 416 69.5
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.6e-176 621.3 415 71.6
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.6e-176 621.3 431 69.4
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 1.2e-175 620.2 420 69.8
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.6e-175 619.8 417 70.7
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.6e-175 619.8 434 68.7
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.1e-175 619.4 420 69.0
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 4.7e-175 618.2 419 70.6
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.7e-175 618.2 431 68.9
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 6.2e-175 617.8 414 69.6
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.4e-174 616.7 420 70.0
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.4e-174 616.7 420 69.5
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 5.2e-174 614.8 455 65.1
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 5.2e-174 614.8 437 68.2
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 8.9e-174 614.0 430 68.8
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 8.9e-174 614.0 409 73.1
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 8.9e-174 614.0 414 69.8
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 2.6e-173 612.5 415 67.7
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 3.4e-173 612.1 412 70.9
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 4.4e-173 611.7 411 69.8
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.0e-171 604.4 417 69.3
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.2e-170 603.6 411 69.8
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.7e-170 602.4 453 64.5
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 3.5e-170 602.1 412 68.7
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.3e-169 600.1 416 70.0
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 6.6e-169 597.8 414 67.4
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.5e-168 596.7 418 67.7
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.3e-168 594.3 420 67.4
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 7.3e-168 594.3 420 68.8
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 9.5e-168 594.0 414 69.6
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.6e-167 592.0 420 69.8
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 3.6e-167 592.0 416 69.0
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 4.0e-166 588.6 413 67.1
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 6.8e-166 587.8 420 68.8
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 8.3e-164 580.9 362 76.0
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 8.3e-164 580.9 502 57.2
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 3.5e-162 575.5 418 66.5
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.3e-161 572.8 422 64.2
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 3.3e-160 568.9 416 66.8
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.1e-158 563.9 416 64.7
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 4.0e-158 562.0 417 65.0
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 8.4e-156 554.3 357 72.3
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 5.4e-155 551.6 367 69.8
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 3.0e-153 545.8 362 69.9
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 6.6e-153 544.7 413 62.0
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.2e-149 533.9 340 73.2
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 2.6e-149 532.7 342 72.5
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 2.3e-145 519.6 419 57.5
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 6.2e-143 511.5 410 59.0
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.0e-137 492.7 437 58.6
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.1e-136 490.7 413 55.9
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 6.2e-135 485.0 419 58.0
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.3e-132 477.2 428 54.7
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.0e-125 453.4 285 73.3
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.1e-123 447.6 344 64.2
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.3e-113 413.3 317 64.7
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 3.8e-108 396.0 400 48.0
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 5.5e-107 392.1 509 41.1
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.8e-105 387.1 301 63.8
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 5.1e-105 385.6 279 64.5
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 5.1e-105 385.6 223 78.0
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.0e-100 371.3 422 45.7
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.0e-97 361.3 405 45.9
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 8.5e-92 341.7 244 64.8
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 9.4e-91 338.2 235 69.4
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.8e-81 305.1 198 73.7
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.7e-79 299.7 198 72.2
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 4.9e-71 272.7 224 60.3
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.5e-67 261.2 226 59.7
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.5e-64 251.1 161 73.9
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.7e-60 237.7 178 64.6
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.4e-56 223.4 258 49.2
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.9e-55 219.5 155 67.1
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.0e-52 211.8 189 55.0
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.3e-52 211.5 179 61.5
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 4.3e-51 206.5 226 48.2
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 7.3e-51 205.7 157 64.3
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.1e-49 201.8 117 76.1
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.3e-44 184.9 337 35.9
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.2e-41 172.9 337 35.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 2.6e-40 170.6 128 64.1
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.9e-38 164.5 127 62.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.2e-38 163.7 121 66.1
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.3e-35 153.3 122 59.8
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 6.2e-34 149.4 100 67.0
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.9e-27 127.9 84 73.8
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.6e-26 124.8 75 72.0
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 5.3e-25 119.8 71 74.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.5e-21 107.1 127 48.0
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 6.5e-15 86.3 57 70.2
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 9.6e-11 72.4 86 41.9
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 2.8e-10 70.9 293 22.9
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 4.8e-10 70.1 86 41.9
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 8.2e-10 69.3 59 62.7
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.2e-08 65.5 35 77.1


User provided reference genes

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