Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.7e-152 542.7 294 100.0
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 7.0e-130 467.6 294 88.1
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 2.4e-61 240.0 301 52.5
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 3.1e-61 239.6 283 51.2
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 3.1e-61 239.6 283 51.2
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 5.3e-61 238.8 280 51.1
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 2.0e-60 236.9 284 51.8
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.7e-59 233.8 276 48.2
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 4.9e-59 232.3 283 47.0
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 1.9e-58 230.3 299 46.8
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 5.4e-58 228.8 287 47.4
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 9.3e-58 228.0 298 48.3
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 6.0e-57 225.3 284 50.4
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 7.9e-57 224.9 283 48.1
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 5.1e-56 222.2 251 53.0
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.9e-55 220.3 291 48.5
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 5.6e-55 218.8 266 47.4
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 7.4e-55 218.4 302 45.0
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 9.6e-55 218.0 255 51.0
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 9.6e-55 218.0 295 46.8
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.6e-54 217.2 268 47.0
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 2.8e-54 216.5 303 44.2
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 2.8e-54 216.5 298 45.0
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 2.8e-54 216.5 294 50.3
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 3.6e-54 216.1 246 51.6
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 4.8e-54 215.7 255 52.2
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 1.4e-53 214.2 302 44.0
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.8e-53 213.8 299 44.8
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.8e-53 213.8 284 48.2
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 3.1e-53 213.0 305 48.2
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 4.0e-53 212.6 260 51.2
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 5.3e-53 212.2 267 52.8
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 5.3e-53 212.2 292 46.2
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.2e-52 211.1 290 44.1
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.2e-52 211.1 295 48.5
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 1.5e-52 210.7 289 45.3
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 2.6e-52 209.9 299 46.2
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 3.8e-51 206.1 263 47.9
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 4.9e-51 205.7 261 48.3
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 4.9e-51 205.7 284 47.9
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 8.4e-51 204.9 295 45.4
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.9e-50 203.8 297 44.1
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.9e-50 203.8 254 46.1
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 2.4e-50 203.4 310 47.7
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 2.4e-50 203.4 284 50.4
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.2e-50 203.0 262 50.0
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 4.2e-50 202.6 287 48.4
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 4.2e-50 202.6 303 49.8
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.2e-49 201.1 285 40.7
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 1.2e-49 201.1 299 50.5
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 1.6e-49 200.7 286 47.9
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.1e-49 200.3 284 47.2
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 2.1e-49 200.3 265 53.2
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 3.5e-49 199.5 298 49.0
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 3.5e-49 199.5 252 52.0
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 3.5e-49 199.5 266 47.0
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.6e-49 199.1 286 47.6
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 6.0e-49 198.7 255 52.9
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 6.0e-49 198.7 303 48.2
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 7.9e-49 198.4 317 42.3
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.0e-48 198.0 254 48.4
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 2.3e-48 196.8 310 43.2
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 3.0e-48 196.4 288 45.1
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 5.1e-48 195.7 289 43.9
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 5.1e-48 195.7 286 48.6
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 5.1e-48 195.7 288 43.4
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 6.7e-48 195.3 310 43.9
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 8.7e-48 194.9 297 43.8
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 1.1e-47 194.5 296 44.6
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 1.1e-47 194.5 284 44.7
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.5e-47 194.1 260 49.2
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.5e-47 194.1 285 46.3
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.5e-47 194.1 285 46.3
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 3.3e-47 193.0 296 42.6
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 5.6e-47 192.2 256 50.8
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 5.6e-47 192.2 290 45.9
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 7.4e-47 191.8 295 46.4
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 1.6e-46 190.7 298 44.0
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 2.1e-46 190.3 291 42.6
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 2.1e-46 190.3 269 46.8
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.8e-46 189.9 299 44.1
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 4.8e-46 189.1 298 45.0
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 4.8e-46 189.1 295 41.4
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 8.1e-46 188.3 245 44.5
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 8.1e-46 188.3 301 45.5
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.4e-45 187.6 299 47.2
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 3.1e-45 186.4 281 46.6
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 4.0e-45 186.0 236 49.6
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 5.3e-45 185.7 297 47.5
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 2.0e-44 183.7 289 42.9
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 2.6e-44 183.3 251 45.8
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 1.0e-43 181.4 290 46.2
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.7e-43 180.6 226 51.8
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 2.9e-43 179.9 218 52.8
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 3.8e-43 179.5 242 46.3
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 6.5e-43 178.7 300 45.7
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 2.5e-42 176.8 239 48.5
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 7.1e-42 175.3 282 42.2
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.0e-40 171.4 279 45.9
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 1.8e-40 170.6 297 44.1
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 1.8e-40 170.6 297 44.1
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.8e-40 170.6 246 50.8
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 1.8e-40 170.6 387 38.0
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 1.5e-39 167.5 290 38.6
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 1.9e-39 167.2 296 43.6
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 1.9e-39 167.2 240 48.8
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 2.5e-39 166.8 245 50.6
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 4.3e-39 166.0 167 57.5
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 5.7e-39 165.6 286 43.7
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 1.3e-38 164.5 285 46.3
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 1.6e-38 164.1 220 53.6
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 1.1e-37 161.4 292 45.2
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.8e-37 160.6 240 49.6
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 1.2e-36 157.9 295 38.6
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 3.4e-36 156.4 232 44.8
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 8.5e-35 151.8 289 36.7
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 8.5e-35 151.8 277 39.0
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 1.4e-34 151.0 278 40.6
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 1.6e-33 147.5 291 37.5
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 1.8e-32 144.1 297 37.7
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.0e-32 143.3 251 41.0
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 7.4e-31 138.7 151 49.7
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 9.7e-31 138.3 238 42.0
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 3.7e-30 136.3 284 35.2
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 4.8e-30 136.0 265 39.6
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 3.1e-29 133.3 311 33.1
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.1e-26 124.8 162 48.8
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.6e-25 120.9 288 37.5
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.8e-24 117.5 242 35.1
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.7e-22 110.9 153 45.8
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 5.0e-19 99.4 76 64.5
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 8.5e-19 98.6 223 32.7
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 2.3e-16 90.5 164 46.3
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 3.1e-13 80.1 161 35.4
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.1e-10 71.6 263 27.0
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 5.5e-10 69.3 57 52.6
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 1.6e-09 67.8 79 43.0
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 6.1e-09 65.9 106 34.0
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 1.7e-06 57.8 56 51.8
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 8.2e-06 55.5 82 39.0


User provided reference genes

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