Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 9.3e-190 666.8 348 100.0
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 3.0e-87 326.2 333 58.0
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.6e-85 320.5 342 55.0
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.9e-81 307.0 340 52.9
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 3.9e-79 299.3 356 49.2
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 6.2e-77 292.0 356 48.3
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.4e-76 290.8 332 53.0
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 4.0e-76 289.3 353 50.7
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.2e-75 287.7 331 52.3
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.5e-75 287.3 341 50.7
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 2.0e-75 287.0 339 52.2
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.4e-75 286.2 339 51.0
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 9.9e-75 284.6 342 51.8
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 3.2e-73 279.6 336 51.5
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 3.2e-73 279.6 336 51.5
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 7.1e-73 278.5 331 51.1
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 1.6e-72 277.3 332 49.4
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 3.5e-72 276.2 332 49.7
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 4.6e-72 275.8 349 50.7
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 6.0e-72 275.4 348 51.4
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 3.9e-71 272.7 331 48.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 5.1e-71 272.3 333 49.5
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 8.7e-71 271.6 333 49.8
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 8.7e-71 271.6 334 48.8
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 8.7e-71 271.6 339 48.4
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.1e-70 271.2 334 48.2
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.1e-70 271.2 331 49.5
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.9e-70 270.4 331 49.2
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 7.3e-70 268.5 342 47.7
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 9.6e-70 268.1 331 49.5
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 9.6e-70 268.1 338 49.4
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.6e-69 267.3 342 48.0
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.6e-69 267.3 331 49.2
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 2.1e-69 266.9 331 48.3
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.1e-69 266.9 331 47.4
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 2.8e-69 266.5 334 45.8
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 8.1e-69 265.0 331 48.0
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.1e-68 264.6 335 47.8
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.1e-68 264.6 335 47.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.1e-68 264.6 340 47.1
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.4e-68 264.2 331 47.1
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 3.1e-68 263.1 335 46.9
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 5.3e-68 262.3 331 47.4
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 5.3e-68 262.3 331 47.4
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 5.3e-68 262.3 333 47.4
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.5e-67 260.8 366 44.8
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.5e-67 260.8 334 47.0
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.0e-67 260.4 331 45.6
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 3.4e-67 259.6 332 46.1
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 3.4e-67 259.6 331 47.7
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 4.4e-67 259.2 335 44.5
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 5.8e-67 258.8 335 46.9
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 9.9e-67 258.1 334 48.2
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.3e-66 257.7 331 46.8
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.7e-66 257.3 361 44.6
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.8e-66 256.1 332 45.8
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 3.8e-66 256.1 331 45.9
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.1e-65 254.6 331 45.9
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.2e-65 253.1 333 47.7
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.2e-65 253.1 334 46.4
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 7.1e-65 251.9 334 45.5
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.7e-64 250.0 333 44.4
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.7e-64 250.0 331 46.5
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.5e-64 249.6 334 45.2
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 4.6e-64 249.2 340 46.5
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.3e-63 247.7 335 43.6
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 1.7e-63 247.3 331 47.1
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.7e-63 247.3 335 47.5
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.7e-63 247.3 362 43.1
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.3e-63 246.9 340 45.6
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 2.3e-63 246.9 334 43.1
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 3.9e-63 246.1 340 45.3
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 6.6e-63 245.4 334 46.1
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 6.6e-63 245.4 327 44.3
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.1e-62 244.6 354 43.5
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 2.5e-62 243.4 337 45.1
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.5e-62 243.4 139 92.1
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 9.6e-62 241.5 340 45.3
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.6e-61 240.7 333 43.8
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.6e-61 240.7 339 44.2
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 3.6e-61 239.6 333 45.0
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 8.1e-61 238.4 336 45.2
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 6.9e-60 235.3 334 44.6
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.5e-59 234.2 330 43.6
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.5e-59 234.2 330 43.6
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 3.4e-59 233.0 332 44.0
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 9.9e-59 231.5 340 43.5
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.3e-58 231.1 341 42.5
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.9e-58 229.9 341 42.5
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 2.9e-58 229.9 340 43.2
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 4.9e-58 229.2 340 42.9
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 6.4e-58 228.8 341 42.2
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.9e-57 227.3 341 42.2
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.9e-57 227.3 337 44.5
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.4e-57 226.9 335 42.1
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 9.3e-57 224.9 330 43.6
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 2.1e-56 223.8 335 42.7
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 6.2e-53 212.2 333 41.7
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 7.6e-51 205.3 332 41.3
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 4.2e-49 199.5 167 61.7
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.6e-48 196.1 332 39.8
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 4.6e-48 196.1 131 73.3
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.0e-47 194.9 334 41.0
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.3e-47 194.5 168 60.7
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 5.1e-47 192.6 331 39.0
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 8.7e-47 191.8 334 39.2
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 7.4e-46 188.7 171 59.1
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.3e-45 188.0 336 38.7
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.7e-45 186.4 337 39.5
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 6.3e-45 185.7 310 39.0
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.4e-44 184.5 338 39.3
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 6.9e-44 182.2 331 39.0
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.7e-42 177.6 175 57.1
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 2.2e-42 177.2 322 38.5
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.6e-40 171.0 326 39.3
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.9e-38 164.1 339 35.7
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.3e-37 161.4 331 35.6
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 6.3e-37 159.1 199 47.7
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.4e-36 157.9 546 26.2
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 2.2e-34 150.6 326 31.3
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 6.1e-32 142.5 142 57.7
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 6.1e-32 142.5 122 56.6
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.3e-31 140.6 134 57.5
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 4.1e-28 129.8 471 27.4
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 4.7e-24 116.3 336 30.4
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 7.9e-24 115.5 242 36.8
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 3.1e-20 103.6 120 43.3
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 1.7e-18 97.8 125 40.8
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.4e-15 88.2 380 24.7
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 4.0e-15 86.7 74 51.4
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 5.3e-12 76.3 147 30.6
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.5e-09 68.2 185 29.7
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 7.2e-09 65.9 97 37.1
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 1.2e-08 65.1 131 34.4
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 1.6e-08 64.7 108 31.5
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 3.6e-08 63.5 104 36.5
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 3.6e-08 63.5 108 30.6
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 6.1e-08 62.8 95 37.9
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 6.1e-08 62.8 104 35.6
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 6.1e-08 62.8 103 34.0
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 1.0e-07 62.0 95 36.8
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 1.0e-07 62.0 95 36.8
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 1.0e-07 62.0 103 33.0
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 1.4e-07 61.6 95 36.8
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 1.4e-07 61.6 95 36.8
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 1.8e-07 61.2 95 37.9
CARHR218910 Cardamine hirsuta HOM05D003624 ORTHO05D004188 1.8e-07 61.2 162 32.1
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 2.3e-07 60.8 95 36.8
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 2.3e-07 60.8 95 36.8
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 2.3e-07 60.8 95 36.8
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 2.3e-07 60.8 95 36.8
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 2.3e-07 60.8 95 36.8
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 2.3e-07 60.8 132 29.5
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 3.0e-07 60.5 111 35.1
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 4.0e-07 60.1 128 32.0
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 4.0e-07 60.1 133 30.8
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 5.2e-07 59.7 102 32.4
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 5.2e-07 59.7 104 31.7
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 6.8e-07 59.3 208 27.9
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 6.8e-07 59.3 104 34.6
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 6.8e-07 59.3 104 33.7
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 1.2e-06 58.5 104 33.7
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 1.5e-06 58.2 257 29.2
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.5e-06 58.2 102 31.4
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 1.5e-06 58.2 154 32.5
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 2.0e-06 57.8 104 31.7
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 2.6e-06 57.4 95 35.8
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 2.6e-06 57.4 103 31.1
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 3.4e-06 57.0 128 32.0
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 3.4e-06 57.0 142 33.1
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 3.4e-06 57.0 169 32.5
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 4.4e-06 56.6 130 29.2
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 4.4e-06 56.6 132 31.1
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 4.4e-06 56.6 132 31.1
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 4.4e-06 56.6 104 33.7
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 5.7e-06 56.2 116 32.8
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 5.7e-06 56.2 132 31.1
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 5.7e-06 56.2 101 33.7
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 7.5e-06 55.8 258 27.1
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 9.8e-06 55.5 134 30.6
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 9.8e-06 55.5 254 27.6


User provided reference genes

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