Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0452 Ceratophyllum demersum HOM05D005956 ORTHO05D007197 4.5e-112 407.9 203 100.0
CDE02G2643 Ceratophyllum demersum HOM05D005956 ORTHO05D007197 3.7e-82 308.5 247 68.4
Nn2g12784 Nelumbo nucifera HOM05D005956 ORTHO05D007197 3.9e-23 112.5 153 43.8
Aqoxy7G02692 Aquilegia oxysepala HOM05D005956 ORTHO05D007197 4.5e-19 99.0 174 36.2
MBI16_g10330_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 1.9e-17 93.6 236 33.5
ATR0626G219 Amborella trichopoda HOM05D005956 ORTHO05D007197 2.3e-15 86.7 183 33.3
PSO170G2336 Papaver somniferum HOM05D005956 ORTHO05D007197 4.3e-14 82.4 121 40.5
PSO063G0021 Papaver somniferum HOM05D005956 ORTHO05D007197 7.4e-14 81.6 146 37.0
Haze_16217 Corylus avellana HOM05D005956 ORTHO05D007197 3.7e-13 79.3 84 48.8
CiPaw.01G207000 Carya illinoinensis HOM05D005956 ORTHO05D007197 1.8e-12 77.0 71 50.7
Cfa003426 Carpinus fangiana HOM05D005956 ORTHO05D007197 5.3e-12 75.5 78 48.7
Oeu039938.1 Olea europaea HOM05D005956 ORTHO05D007197 5.3e-12 75.5 133 37.6
Nitab4.5_0000499g0110 Nicotiana tabacum HOM05D005956 ORTHO05D007197 6.9e-12 75.1 143 39.2
Hund05666 Selenicereus undatus HOM05D005956 ORTHO05D007197 9.1e-12 74.7 128 37.5
MELO3C020528.2 Cucumis melo HOM05D005956 ORTHO05D007197 1.5e-11 73.9 104 36.5
SEGI_03409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 2.0e-11 73.6 146 32.9
Sc05g0006980 Simmondsia chinensis HOM05D005956 ORTHO05D007197 2.0e-11 73.6 175 33.1
Lj7A719T46 Lonicera japonica HOM05D005956 ORTHO05D007197 2.6e-11 73.2 85 47.1
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 5.9e-11 72.0 114 36.8
CsaV3_1G036410 Cucumis sativus L. HOM05D005956 ORTHO05D007197 7.7e-11 71.6 104 34.6
Manes.14G006900 Manihot esculenta HOM05D005956 ORTHO05D007197 7.7e-11 71.6 76 43.4
SEGI_15409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 1.0e-10 71.2 94 39.4
Gorai.010G135000 Gossypium raimondii HOM05D005956 ORTHO05D007197 1.3e-10 70.9 76 44.7
Hma1.2p1_1111F.1_g258470 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 1.7e-10 70.5 78 50.0
Gohir.D06G117400 Gossypium hirsutum HOM05D005956 ORTHO05D007197 2.9e-10 69.7 76 43.4
Peaxi162Scf00038g02615 Petunia axillaris HOM05D005956 ORTHO05D007197 3.8e-10 69.3 92 46.7
Rhsim08G0251500 Rhododendron simsii HOM05D005956 ORTHO05D007197 3.8e-10 69.3 75 50.7
SGA_v2.0_scaffold69G23343 Striga asiatica HOM05D005956 ORTHO05D007197 3.8e-10 69.3 187 29.4
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 6.5e-10 68.6 71 50.7
Ah.05g168390 Amaranthus hybridus HOM05D005956 ORTHO05D007197 1.9e-09 67.0 166 31.9
COL.COLO4_25126 Corchorus olitorius HOM05D005956 ORTHO05D007197 1.9e-09 67.0 75 44.0
Sabra07G0001300 Salix brachista HOM05D005956 ORTHO05D007197 1.9e-09 67.0 74 48.6
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 3.2e-09 66.2 187 28.9
Thecc.06G054100 Theobroma cacao HOM05D005956 ORTHO05D007197 3.2e-09 66.2 83 42.2
MD17G1161200 Malus domestica HOM05D005956 ORTHO05D007197 4.2e-09 65.9 77 40.3
CANSAT01G3224 Cannabis sativa HOM05D005956 ORTHO05D007197 5.5e-09 65.5 132 31.1
QL07p046118 Quercus lobata HOM05D005956 ORTHO05D007197 5.5e-09 65.5 93 39.8
PGSC0003DMG400009194 Solanum tuberosum HOM05D005956 ORTHO05D007197 5.5e-09 65.5 138 37.0
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 7.2e-09 65.1 113 33.6
Duzib192G0068 Durio zibethinus HOM05D005956 ORTHO05D007197 9.4e-09 64.7 76 44.7
CSS0010876 Camellia sinensis var. sinensis HOM05D005956 ORTHO05D007197 2.7e-08 63.2 102 39.2
Solyc03g124040.3 Solanum lycopersicum HOM05D005956 ORTHO05D007197 2.7e-08 63.2 136 34.6
Sopen03g041770 Solanum pennellii HOM05D005956 ORTHO05D007197 2.7e-08 63.2 136 34.6
SGA_v2.0_scaffold115G32115 Striga asiatica HOM05D005956 ORTHO05D007197 2.7e-08 63.2 85 38.8
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 2.7e-08 63.2 76 47.4
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 3.6e-08 62.8 113 32.7
EL10Ac7g17213 Beta vulgaris HOM05D005956 ORTHO05D007197 4.7e-08 62.4 83 44.6
Potri.007G001800 Populus trichocarpa HOM05D005956 ORTHO05D007197 6.1e-08 62.0 74 45.9
Phvul.005G185600 Phaseolus vulgaris HOM05D005956 ORTHO05D007197 7.9e-08 61.6 76 46.1
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 7.9e-08 61.6 80 47.5
CAN.G790.4 Capsicum annuum HOM05D005956 ORTHO05D007197 1.0e-07 61.2 91 40.7
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.0e-07 61.2 113 33.6
vmacro18734 Vaccinium macrocarpon HOM05D005956 ORTHO05D007197 1.4e-07 60.8 79 44.3
Psat5g306040 Pisum sativum HOM05D005956 ORTHO05D007197 1.8e-07 60.5 100 37.0
Prupe.3G025200 Prunus persica HOM05D005956 ORTHO05D007197 2.3e-07 60.1 71 46.5
ECA233G3598 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-07 59.7 69 50.7
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 3.0e-07 59.7 77 37.7
TWI12G1352 Tripterygium wilfordii HOM05D005956 ORTHO05D007197 3.0e-07 59.7 77 42.9
Actinidia21896 Actinidia chinensis HOM05D005956 ORTHO05D007197 3.9e-07 59.3 53 50.9
CARHR072540 Cardamine hirsuta HOM05D005956 ORTHO05D007197 3.9e-07 59.3 74 41.9
Ciclev10013933m.g Citrus clementina HOM05D005956 ORTHO05D007197 3.9e-07 59.3 84 41.7
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 3.9e-07 59.3 76 53.9
RcHm_v2.0_Chr2g0149071 Rosa chinensis HOM05D005956 ORTHO05D007197 3.9e-07 59.3 77 39.0
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 3.9e-07 59.3 104 37.5
Actinidia38816 Actinidia chinensis HOM05D005956 ORTHO05D007197 6.7e-07 58.5 53 52.8
AT1G78930 Arabidopsis thaliana HOM05D005956 ORTHO05D007197 8.8e-07 58.2 72 38.9
Actinidia24382 Actinidia chinensis HOM05D005956 ORTHO05D007197 1.1e-06 57.8 52 53.8
Lsat_1_v5_gn_4_106240 Lactuca sativa HOM05D005956 ORTHO05D007197 1.1e-06 57.8 74 47.3
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 1.5e-06 57.4 108 38.9
THA.LOC104812335 Tarenaya hassleriana HOM05D005956 ORTHO05D007197 1.5e-06 57.4 71 45.1
Zm00001eb000010 Zea mays HOM05D005956 ORTHO05D007197 1.5e-06 57.4 95 32.6
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 2.0e-06 57.0 79 44.3
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 2.0e-06 57.0 77 39.0
AUR62000122 Chenopodium quinoa HOM05D005956 ORTHO05D007197 2.6e-06 56.6 79 38.0
AUR62019303 Chenopodium quinoa HOM05D005956 ORTHO05D007197 2.6e-06 56.6 69 43.5
Ca_00996_v3 Cicer arietinum L. HOM05D005956 ORTHO05D007197 2.6e-06 56.6 71 45.1
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 3.3e-06 56.2 108 38.0
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 3.3e-06 56.2 76 44.7
BraA07t31918Z Brassica rapa HOM05D000309 ORTHO05D007197 4.4e-06 55.8 78 38.5
Os09g0560100 Oryza sativa ssp. japonica HOM05D005956 ORTHO05D007197 4.4e-06 55.8 85 36.5
Zm00001eb320340 Zea mays HOM05D005956 ORTHO05D007197 4.4e-06 55.8 95 30.5
AL2G39370 Arabidopsis lyrata HOM05D005956 ORTHO05D007197 5.7e-06 55.5 74 37.8
HanXRQChr15g0497231 Helianthus annuus HOM05D005956 ORTHO05D007197 5.7e-06 55.5 69 43.5
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 5.7e-06 55.5 90 41.1
Aa31LG4G2050 Aethionema arabicum HOM05D005956 ORTHO05D007197 9.7e-06 54.7 65 43.1
Carub.0002s2578 Capsella rubella HOM05D005956 ORTHO05D007197 9.7e-06 54.7 63 42.9
Migut.D02038 Erythranthe guttata HOM05D005956 ORTHO05D007197 9.7e-06 54.7 124 29.8
Sp5g33970 Schrenkiella parvula HOM05D005956 ORTHO05D007197 9.7e-06 54.7 65 41.5


User provided reference genes

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