Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 1.7e-132 476.1 249 100.0
LjContig00315g0013151 Lotus japonicus HOM05D008466 ORTHO05D010817 3.9e-65 252.3 139 92.8
A04p09550 Brassica napus HOM05D008466 ORTHO05D010817 3.1e-62 242.7 139 89.9
Nitab4.5_0002325g0090 Nicotiana tabacum HOM05D008466 ORTHO05D010817 8.4e-60 234.6 149 83.2
Nitab4.5_0010033g0120 Nicotiana tabacum HOM05D008466 ORTHO05D010817 7.1e-59 231.5 135 88.1
Lalb_Chr00c21g0406001 Lupinus albus HOM05D008466 ORTHO05D010817 4.3e-56 222.2 128 90.6
Potri.007G062442 Populus trichocarpa HOM05D008466 ORTHO05D010817 5.8e-53 211.8 128 88.3
ATMG00285 Arabidopsis thaliana HOM05D008466 ORTHO05D010817 1.7e-52 210.3 126 88.1
BolSC28t60321H Brassica oleracea HOM05D008466 ORTHO05D010817 1.7e-52 210.3 128 86.7
BraSC48t46287Z Brassica rapa HOM05D008466 ORTHO05D010817 1.7e-52 210.3 128 86.7
BraSC48t46336Z Brassica rapa HOM05D008466 ORTHO05D010817 1.7e-52 210.3 128 86.7
Nitab4.5_0014136g0010 Nicotiana tabacum HOM05D008466 ORTHO05D010817 1.8e-49 200.3 126 85.7
Glyma.01G136900 Glycine max HOM05D008466 ORTHO05D010817 3.9e-49 199.1 128 79.7
Nitab4.5_0001796g0330 Nicotiana tabacum HOM05D008466 ORTHO05D010817 5.1e-49 198.7 119 85.7
Nitab4.5_0000031g0180 Nicotiana tabacum HOM05D008466 ORTHO05D011423 1.1e-48 197.6 148 73.0
BolSC28t60423H Brassica oleracea HOM05D008466 ORTHO05D010817 6.5e-44 181.8 116 82.8
SEGI_14764 Sequoiadendron giganteum HOM05D008466 ORTHO05D010817 1.4e-43 180.6 126 77.0
Nitab4.5_0008578g0050 Nicotiana tabacum HOM05D008466 ORTHO05D011423 9.3e-43 177.9 106 86.8
Nitab4.5_0000172g1700 Nicotiana tabacum HOM05D008466 ORTHO05D010817 9.4e-35 151.4 95 82.1
TPR.G7441 Trifolium pratense HOM05D008466 ORTHO05D010817 1.6e-34 150.6 86 91.9
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 6.1e-34 148.7 87 94.3
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 6.1e-34 148.7 87 95.4
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 7.9e-34 148.3 86 95.3
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 7.9e-34 148.3 86 95.3
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 3.0e-33 146.4 87 94.3
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 3.0e-33 146.4 87 94.3
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 3.0e-33 146.4 87 94.3
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 3.0e-33 146.4 87 94.3
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 3.0e-33 146.4 87 94.3
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 3.9e-33 146.0 85 95.3
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 3.9e-33 146.0 85 95.3
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 1.5e-32 144.1 87 93.1
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 1.5e-32 144.1 87 93.1
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 1.5e-32 144.1 87 93.1
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 1.9e-32 143.7 84 95.2
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 2.5e-32 143.3 83 95.2
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 2.5e-32 143.3 87 93.1
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 2.5e-32 143.3 87 93.1
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 2.5e-32 143.3 87 93.1
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 3.3e-32 142.9 87 92.0
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 4.3e-32 142.5 87 92.0
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 1.3e-31 141.0 85 91.8
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 1.3e-31 141.0 85 91.8
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 1.3e-31 141.0 85 91.8
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 1.3e-31 141.0 87 90.8
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 1.3e-31 141.0 87 90.8
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 1.3e-31 141.0 95 85.3
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 2.2e-31 140.2 84 92.9
Lalb_Chr00c39g0409011 Lupinus albus HOM05D008466 ORTHO05D010817 3.7e-31 139.4 74 95.9
Lalb_Chr00c39g0409191 Lupinus albus HOM05D008466 ORTHO05D010817 3.7e-31 139.4 74 95.9
Lalb_Chr18g0049571 Lupinus albus HOM05D008466 ORTHO05D010817 3.7e-31 139.4 74 95.9
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 8.2e-31 138.3 85 90.6
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 8.2e-31 138.3 85 90.6
arahy.Tifrunner.gnm1.ann1.48KRUQ Arachis hypogaea HOM05D008466 ORTHO05D010817 1.8e-30 137.1 73 95.9
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.8e-30 137.1 141 62.4
VMungo0565G0006 Vigna mungo HOM05D008466 ORTHO05D010817 1.8e-30 137.1 74 94.6
SalBow1G0863 Salvia bowleyana HOM05D008466 ORTHO05D010817 4.1e-30 136.0 74 94.6
Medtr2g040780 Medicago truncatula HOM05D008466 ORTHO05D010817 5.3e-30 135.6 75 92.0
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 6.9e-30 135.2 140 61.4
HanXRQChr07g0188981 Helianthus annuus HOM05D008204 ORTHO05D010378 2.0e-29 133.7 84 89.3
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 7.7e-29 131.7 84 89.3
CiPaw.11G081100 Carya illinoinensis HOM05D008466 ORTHO05D010817 7.7e-29 131.7 74 91.9
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 7.7e-29 131.7 79 91.1
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 7.7e-29 131.7 79 91.1
Gorai.001G160700 Gossypium raimondii HOM05D008204 ORTHO05D010378 1.0e-28 131.3 77 94.8
Gorai.001G167700 Gossypium raimondii HOM05D008466 ORTHO05D010817 3.8e-28 129.4 91 74.7
Nitab4.5_0000580g0160 Nicotiana tabacum HOM05D008466 ORTHO05D010817 3.8e-28 129.4 140 55.7
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 3.8e-28 129.4 87 86.2
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 3.8e-28 129.4 87 86.2
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 8.5e-28 128.3 113 69.9
BraSC48t46321Z Brassica rapa HOM05D008204 ORTHO05D010378 3.2e-27 126.3 74 94.6
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 4.2e-27 125.9 100 70.0
Zm00001eb187490 Zea mays HOM05D008466 ORTHO05D010817 1.6e-26 124.0 74 87.8
Zm00001eb436220 Zea mays HOM05D008466 ORTHO05D010817 1.6e-26 124.0 74 87.8
Zm00001eb436270 Zea mays HOM05D008466 ORTHO05D010817 1.6e-26 124.0 74 87.8
Zm00001eb436350 Zea mays HOM05D008466 ORTHO05D010817 1.6e-26 124.0 74 87.8
Zm00001eb436460 Zea mays HOM05D008466 ORTHO05D010817 1.6e-26 124.0 74 87.8
Zm00001eb436500 Zea mays HOM05D008466 ORTHO05D010817 1.6e-26 124.0 74 87.8
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 2.7e-26 123.2 72 94.4
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 1.0e-25 121.3 70 95.7
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 1.8e-25 120.6 70 95.7
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 6.7e-25 118.6 87 82.8
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 6.7e-25 118.6 87 82.8
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 6.7e-25 118.6 87 82.8
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 8.8e-25 118.2 70 94.3
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 3.3e-24 116.3 70 92.9
Medtr8g059750 Medicago truncatula HOM05D008466 ORTHO05D010817 1.1e-22 111.3 78 78.2
Nitab4.5_0001952g0260 Nicotiana tabacum HOM05D008466 ORTHO05D010817 1.4e-22 110.9 66 86.4
SEGI_24171 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 4.1e-22 109.4 84 77.4
SHI51809 Sapria himalayana HOM05D008204 ORTHO05D010378 9.1e-22 108.2 62 95.2
SHI54418 Sapria himalayana HOM05D008204 ORTHO05D010378 2.0e-21 107.1 67 89.6
Aa31csc1168G40 Aethionema arabicum HOM05D008204 ORTHO05D010378 5.9e-21 105.5 64 93.8
Peaxi162Scf00651g00634 Petunia axillaris HOM05D008466 ORTHO05D010817 5.9e-21 105.5 80 73.8
SHI41393 Sapria himalayana HOM05D008204 ORTHO05D010378 1.0e-20 104.8 63 88.9
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.8e-20 102.8 63 92.1
HanXRQChr11g0327851 Helianthus annuus HOM05D008204 ORTHO05D010378 3.8e-20 102.8 63 90.5
Mapoly0157s0028 Marchantia polymorpha HOM05D008466 ORTHO05D010817 5.0e-20 102.4 74 75.7
RcHm_v2.0_MTg0498181 Rosa chinensis HOM05D008466 ORTHO05D010817 8.0e-18 95.1 48 100.0
HanXRQChr07g0189011 Helianthus annuus HOM05D008204 ORTHO05D010378 6.7e-17 92.0 54 94.4
arahy.Tifrunner.gnm1.ann1.GWEJ34 Arachis hypogaea HOM05D008466 ORTHO05D010817 8.8e-17 91.7 48 95.8
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 1.1e-16 91.3 67 79.1
BraSC48t46301Z Brassica rapa HOM05D008466 ORTHO05D010817 2.6e-16 90.1 52 84.6
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 1.7e-15 87.4 63 84.1
Carub.0006s2655 Capsella rubella HOM05D008466 ORTHO05D010817 8.2e-15 85.1 64 71.9
PSO764G0230 Papaver somniferum HOM05D017042 ORTHO05D018469 4.5e-13 79.3 55 80.0
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.0e-12 78.2 54 79.6
unitig_87.g27951 Utricularia gibba HOM05D008204 ORTHO05D010378 5.0e-12 75.9 45 93.3
BraSC54t46364Z Brassica rapa HOM05D008204 ORTHO05D010378 1.1e-11 74.7 46 91.3
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.5e-11 74.3 45 91.1
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.5e-11 74.3 45 91.1
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 9.4e-11 71.6 97 45.4
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 2.1e-10 70.5 50 80.0
SHI07475 Sapria himalayana HOM05D008204 ORTHO05D010378 3.0e-09 66.6 62 62.9
SMO310G0006 Selaginella moellendorffii HOM05D006493 ORTHO05D009864 6.7e-09 65.5 123 39.8
Nitab4.5_0000172g1780 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.5e-08 64.3 43 83.7
SEGI_26273 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 4.4e-08 62.8 51 72.5
Mapoly0002s0163 Marchantia polymorpha HOM05D008204 ORTHO05D010378 2.2e-07 60.5 44 79.5
Nitab4.5_0001152g0280 Nicotiana tabacum HOM05D008204 ORTHO05D016167 1.4e-06 57.8 37 83.8
C02p41480 Brassica napus HOM05D008204 ORTHO05D010378 2.4e-06 57.0 71 57.7
BolC2t10165H Brassica oleracea HOM05D008204 ORTHO05D010378 2.4e-06 57.0 71 57.7


User provided reference genes

Program Settings