Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0384 Ceratophyllum demersum HOM05D003596 ORTHO05D004256 1.3e-58 229.6 120 100.0
MSTRG.25976 Avicennia marina HOM05D003596 ORTHO05D004256 1.5e-22 109.8 84 65.5
PSO210G3757 Papaver somniferum HOM05D003596 ORTHO05D004256 3.3e-22 108.6 84 67.9
PSO210G4954 Papaver somniferum HOM05D003596 ORTHO05D004256 1.7e-21 106.3 84 66.7
Sopen08g018130 Solanum pennellii HOM05D003596 ORTHO05D004256 1.7e-21 106.3 84 64.3
Gohir.D05G041700 Gossypium hirsutum HOM05D003596 ORTHO05D004256 2.2e-21 105.9 84 61.9
Solyc08g062610.4 Solanum lycopersicum HOM05D003596 ORTHO05D004256 2.2e-21 105.9 77 68.8
Cc00_g33530 Coffea canephora HOM05D003596 ORTHO05D004256 2.8e-21 105.5 84 64.3
Dinv12460 Davidia involucrata HOM05D003596 ORTHO05D004256 2.8e-21 105.5 84 65.5
SGA_v2.0_scaffold64G21855 Striga asiatica HOM05D003596 ORTHO05D004256 2.8e-21 105.5 84 61.9
TWI63G1485 Tripterygium wilfordii HOM05D003596 ORTHO05D004256 2.8e-21 105.5 84 63.1
Gorai.009G042400 Gossypium raimondii HOM05D003596 ORTHO05D004256 8.3e-21 104.0 84 60.7
Gohir.A05G040200 Gossypium hirsutum HOM05D003596 ORTHO05D004256 1.8e-20 102.8 84 60.7
Aqoxy7G03993 Aquilegia oxysepala HOM05D003596 ORTHO05D004256 2.4e-20 102.4 86 58.1
Oeu018037.2 Olea europaea HOM05D003596 ORTHO05D004256 2.4e-20 102.4 84 60.7
Sc06g0001060 Simmondsia chinensis HOM05D003596 ORTHO05D004256 2.4e-20 102.4 84 61.9
Nitab4.5_0006016g0010 Nicotiana tabacum HOM05D003596 ORTHO05D004256 4.1e-20 101.7 84 61.9
Duzib150G0181 Durio zibethinus HOM05D003596 ORTHO05D004256 5.3e-20 101.3 84 61.9
Migut.A00103 Erythranthe guttata HOM05D003596 ORTHO05D004256 7.0e-20 100.9 84 58.3
Sed0005044 Sechium edule HOM05D003596 ORTHO05D004256 7.0e-20 100.9 84 60.7
CsaV3_4G035870 Cucumis sativus L. HOM05D003596 ORTHO05D004256 9.1e-20 100.5 84 60.7
Psat5g035440 Pisum sativum HOM05D003596 ORTHO05D004256 9.1e-20 100.5 84 59.5
SalBow4G3232 Salvia bowleyana HOM05D003596 ORTHO05D004256 9.1e-20 100.5 77 66.2
TPR.G3519 Trifolium pratense HOM05D003596 ORTHO05D004256 9.1e-20 100.5 84 60.7
Thecc.09G058900 Theobroma cacao HOM05D003596 ORTHO05D004256 1.2e-19 100.1 81 63.0
GSVIVG01035424001 Vitis vinifera HOM05D003596 ORTHO05D004256 1.2e-19 100.1 84 59.5
Actinidia29320 Actinidia chinensis HOM05D003596 ORTHO05D004256 1.6e-19 99.8 84 58.3
CANSAT21G2424 Cannabis sativa HOM05D003596 ORTHO05D004256 1.6e-19 99.8 84 61.9
MD15G1054300 Malus domestica HOM05D003596 ORTHO05D004256 1.6e-19 99.8 84 59.5
Peaxi162Scf00070g00020 Petunia axillaris HOM05D003596 ORTHO05D004256 1.6e-19 99.8 98 54.1
COL.COLO4_21105 Corchorus olitorius HOM05D003596 ORTHO05D004256 2.0e-19 99.4 84 59.5
Nn8g38751 Nelumbo nucifera HOM05D003596 ORTHO05D004256 2.0e-19 99.4 84 58.3
Ca_15848_v3 Cicer arietinum L. HOM05D003596 ORTHO05D004256 2.7e-19 99.0 84 58.3
Manes.16G083300 Manihot esculenta HOM05D003596 ORTHO05D004256 2.7e-19 99.0 84 59.5
Prupe.1G407700 Prunus persica HOM05D003596 ORTHO05D004256 5.9e-19 97.8 84 59.5
Sabra18G0052600 Salix brachista HOM05D003596 ORTHO05D004256 5.9e-19 97.8 84 60.7
TAR626G0212 Trochodendron aralioides HOM05D003596 ORTHO05D004256 5.9e-19 97.8 79 63.3
Eucgr.C00673 Eucalyptus grandis HOM05D003596 ORTHO05D004256 7.7e-19 97.4 84 59.5
Ca_15814_v3 Cicer arietinum L. HOM05D003596 ORTHO05D004256 1.0e-18 97.1 84 58.3
Potri.018G060000 Populus trichocarpa HOM05D003596 ORTHO05D004256 1.0e-18 97.1 84 59.5
Atru.chr7.1894 Acer truncatum HOM05D003596 ORTHO05D004256 1.7e-18 96.3 84 59.5
Atru.chr7.1921 Acer truncatum HOM05D003596 ORTHO05D004256 1.7e-18 96.3 84 59.5
CSS0012931 Camellia sinensis var. sinensis HOM05D003596 ORTHO05D004256 1.7e-18 96.3 84 59.5
CSS0037935 Camellia sinensis var. sinensis HOM05D003596 ORTHO05D004256 1.7e-18 96.3 84 59.5
FAN15G0358 Fragaria x ananassa HOM05D003596 ORTHO05D004256 1.7e-18 96.3 84 58.3
vmacro22567 Vaccinium macrocarpon HOM05D003596 ORTHO05D004256 1.7e-18 96.3 84 59.5
ClCG05G018100 Citrullus lanatus HOM05D003596 ORTHO05D004256 2.2e-18 95.9 84 57.1
FvH4_2g31420 Fragaria vesca HOM05D003596 ORTHO05D004256 2.2e-18 95.9 84 58.3
FAN24G3537 Fragaria x ananassa HOM05D003596 ORTHO05D004256 2.2e-18 95.9 84 58.3
Medtr3g104740 Medicago truncatula HOM05D003596 ORTHO05D004256 2.2e-18 95.9 84 57.1
Psat5g131440 Pisum sativum HOM05D003596 ORTHO05D004256 2.2e-18 95.9 84 58.3
Hund03308 Selenicereus undatus HOM05D003596 ORTHO05D004256 2.2e-18 95.9 84 58.3
RcHm_v2.0_Chr6g0311401 Rosa chinensis HOM05D003596 ORTHO05D004256 2.9e-18 95.5 84 58.3
C01p05570 Brassica napus HOM05D003596 ORTHO05D004256 3.8e-18 95.1 84 57.1
BolC1t00537H Brassica oleracea HOM05D003596 ORTHO05D004256 3.8e-18 95.1 84 57.1
BraA01t00492Z Brassica rapa HOM05D003596 ORTHO05D004256 3.8e-18 95.1 84 57.1
FAN27G2313 Fragaria x ananassa HOM05D003596 ORTHO05D004256 3.8e-18 95.1 84 58.3
QL02p000417 Quercus lobata HOM05D003596 ORTHO05D004256 3.8e-18 95.1 84 58.3
CAN.G143.21 Capsicum annuum HOM05D003596 ORTHO05D004256 5.0e-18 94.7 84 58.3
Lsat_1_v5_gn_7_60761 Lactuca sativa HOM05D003596 ORTHO05D004256 6.5e-18 94.4 84 57.1
Lj1g0007600 Lotus japonicus HOM05D003596 ORTHO05D004256 6.5e-18 94.4 84 58.3
arahy.Tifrunner.gnm1.ann1.N0QBSQ Arachis hypogaea HOM05D003596 ORTHO05D004256 8.5e-18 94.0 81 58.0
arahy.Tifrunner.gnm1.ann1.YCFU7L Arachis hypogaea HOM05D003596 ORTHO05D004256 8.5e-18 94.0 81 58.0
CiPaw.15G034900 Carya illinoinensis HOM05D003596 ORTHO05D004256 8.5e-18 94.0 81 61.7
Ciclev10008761m.g Citrus clementina HOM05D003596 ORTHO05D004256 1.5e-17 93.2 84 58.3
Cpa.g.sc91.83 Carica papaya HOM05D003596 ORTHO05D004256 1.9e-17 92.8 84 58.3
PGR031G3048 Punica granatum HOM05D003596 ORTHO05D004256 2.5e-17 92.4 84 56.0
ATR0051G014 Amborella trichopoda HOM05D003596 ORTHO05D004256 3.2e-17 92.0 84 54.8
Manes.16G083201 Manihot esculenta HOM05D003596 ORTHO05D004256 5.5e-17 91.3 84 57.1
Sp7g30860 Schrenkiella parvula HOM05D003596 ORTHO05D004256 7.2e-17 90.9 84 54.8
PSO210G3791 Papaver somniferum HOM05D003596 ORTHO05D004256 9.4e-17 90.5 84 57.1
HPP92_024003 Vanilla planifolia HOM05D003596 ORTHO05D004256 1.2e-16 90.1 84 51.2
Cc00_g33520 Coffea canephora HOM05D003596 ORTHO05D004256 1.6e-16 89.7 76 63.2
Lalb_Chr08g0244911 Lupinus albus HOM05D003596 ORTHO05D004256 1.6e-16 89.7 84 52.4
THA.LOC104803716 Tarenaya hassleriana HOM05D003596 ORTHO05D004256 1.6e-16 89.7 84 53.6
BcaNung02153 Brassica carinata HOM05D003596 ORTHO05D004256 2.1e-16 89.4 84 54.8
C07p59490 Brassica napus HOM05D003596 ORTHO05D004256 2.1e-16 89.4 84 54.8
BolC7t46393H Brassica oleracea HOM05D003596 ORTHO05D004256 2.1e-16 89.4 84 54.8
BraA03t15215Z Brassica rapa HOM05D003596 ORTHO05D004256 2.1e-16 89.4 84 54.8
AL7G18450 Arabidopsis lyrata HOM05D003596 ORTHO05D004256 2.7e-16 89.0 84 53.6
COL.COLO4_06847 Corchorus olitorius HOM05D003596 ORTHO05D004256 3.6e-16 88.6 84 56.0
A03p61780 Brassica napus HOM05D003596 ORTHO05D004256 4.7e-16 88.2 84 53.6
HanXRQChr03g0071431 Helianthus annuus HOM05D003596 ORTHO05D004256 4.7e-16 88.2 84 53.6
Sopen08g018080 Solanum pennellii HOM05D003596 ORTHO05D004256 4.7e-16 88.2 84 54.8
ECA240G3089 Erigeron canadensis HOM05D003596 ORTHO05D004256 6.1e-16 87.8 84 53.6
Thhalv10025572m.g Eutrema salsugineum HOM05D003596 ORTHO05D004256 6.1e-16 87.8 84 52.4
ClCG05G018110 Citrullus lanatus HOM05D003596 ORTHO05D004256 1.0e-15 87.0 84 51.2
AT4G33110 Arabidopsis thaliana HOM05D003596 ORTHO05D004256 1.4e-15 86.7 84 53.6
Carub.0007s0734 Capsella rubella HOM05D003596 ORTHO05D004256 1.4e-15 86.7 84 53.6
CARHR241140 Cardamine hirsuta HOM05D003596 ORTHO05D004256 1.4e-15 86.7 84 52.4
VMungo1309G0065 Vigna mungo HOM05D003596 ORTHO05D004256 1.4e-15 86.7 84 54.8
EL10Ac2g03812 Beta vulgaris HOM05D003596 ORTHO05D004256 2.3e-15 85.9 84 53.6
AUR62009106 Chenopodium quinoa HOM05D003596 ORTHO05D004256 4.0e-15 85.1 84 52.4
unitig_748.g7532 Utricularia gibba HOM05D003596 ORTHO05D004256 4.0e-15 85.1 90 48.9
AUR62020561 Chenopodium quinoa HOM05D003596 ORTHO05D004256 6.8e-15 84.3 84 51.2
AUR62020565 Chenopodium quinoa HOM05D003596 ORTHO05D004256 6.8e-15 84.3 84 51.2
Glyma.04G054100 Glycine max HOM05D003596 ORTHO05D004256 1.2e-14 83.6 96 46.9
Phvul.009G079900 Phaseolus vulgaris HOM05D003596 ORTHO05D004256 3.4e-14 82.0 84 51.2
AT4G33120 Arabidopsis thaliana HOM05D003596 ORTHO05D004256 7.5e-14 80.9 84 51.2
vmacro17443 Vaccinium macrocarpon HOM05D003596 ORTHO05D004256 9.8e-14 80.5 60 66.7
THA.LOC104803717 Tarenaya hassleriana HOM05D003596 ORTHO05D004256 3.7e-13 78.6 84 47.6
Glyma.06G054400 Glycine max HOM05D003596 ORTHO05D004256 4.8e-13 78.2 84 47.6
Sopen08g018030 Solanum pennellii HOM05D000006 ORTHO05D000001 4.8e-13 78.2 60 65.0
BcaC09g52114 Brassica carinata HOM05D002132 ORTHO05D002168 4.1e-12 75.1 83 47.0
Aa31LG7G10170 Aethionema arabicum HOM05D003596 ORTHO05D004256 5.4e-12 74.7 77 49.4
Ah.10g034070 Amaranthus hybridus HOM05D003596 ORTHO05D004256 7.7e-11 70.9 84 44.0
CBR_g6365 Chara braunii HOM05D003596 ORTHO05D004256 2.8e-08 62.4 75 40.0
Mapoly0103s0018 Marchantia polymorpha HOM05D003596 ORTHO05D004256 4.7e-08 61.6 73 39.7
SMO271G0076 Selaginella moellendorffii HOM05D003596 ORTHO05D004256 4.7e-08 61.6 66 42.4
AagrBONN_evm.TU.Sc2ySwM_117.2988 Anthoceros agrestis HOM05D003596 ORTHO05D004256 1.0e-07 60.5 65 46.2
Pp3c17_22760 Physcomitrium patens HOM05D003596 ORTHO05D004256 1.4e-07 60.1 74 40.5


User provided reference genes

Program Settings