Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 6.4e-224 780.4 387 100.0
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.6e-142 510.0 384 66.9
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.4e-138 496.9 384 65.6
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 3.1e-138 495.7 384 65.6
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.7e-137 492.7 386 65.5
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 8.6e-136 487.6 384 63.8
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 5.5e-135 485.0 384 65.1
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 5.5e-135 485.0 384 64.6
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 2.1e-134 483.0 384 65.1
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.8e-134 482.6 384 64.8
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.2e-132 477.2 384 63.0
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.4e-132 475.3 384 64.1
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.7e-131 473.4 384 63.8
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 3.7e-131 472.2 386 61.9
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 8.3e-131 471.1 384 63.3
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.4e-130 470.3 384 62.8
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 2.4e-130 469.5 384 63.5
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 5.4e-130 468.4 384 63.0
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 5.4e-130 468.4 384 61.2
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 5.4e-130 468.4 384 60.9
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 7.0e-130 468.0 384 61.2
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.2e-129 467.2 387 60.2
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-129 467.2 384 63.0
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.0e-129 466.5 384 61.5
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.7e-129 466.1 384 62.8
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.7e-129 466.1 384 62.8
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.8e-129 464.5 387 60.2
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 7.8e-129 464.5 387 59.9
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 7.8e-129 464.5 384 60.2
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.7e-128 463.4 384 62.2
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 2.3e-128 463.0 387 61.0
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.3e-128 463.0 384 62.2
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 3.8e-128 462.2 384 62.2
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 6.6e-128 461.5 384 60.9
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 8.6e-128 461.1 385 61.3
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 8.6e-128 461.1 384 61.7
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.1e-127 460.7 385 61.6
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 2.5e-127 459.5 384 61.5
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 3.3e-127 459.1 384 62.5
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-127 459.1 392 61.5
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 4.3e-127 458.8 384 59.1
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 4.3e-127 458.8 384 62.5
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 7.3e-127 458.0 370 63.8
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 3.6e-126 455.7 388 60.3
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 8.0e-126 454.5 385 60.5
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 8.0e-126 454.5 388 59.5
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.8e-125 453.4 384 60.4
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.8e-125 453.4 384 61.2
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.3e-125 453.0 387 60.7
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.3e-125 453.0 387 59.7
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 3.0e-125 452.6 387 59.4
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 4.0e-125 452.2 384 60.7
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 8.9e-125 451.1 387 59.9
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 8.9e-125 451.1 384 61.5
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 8.9e-125 451.1 384 60.4
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.2e-124 450.7 384 60.4
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.0e-124 449.9 384 60.7
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 2.6e-124 449.5 388 59.8
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 3.4e-124 449.1 387 59.7
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 4.4e-124 448.7 388 60.1
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 4.4e-124 448.7 384 60.7
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 5.8e-124 448.4 388 60.3
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 7.5e-124 448.0 383 59.5
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 7.5e-124 448.0 387 58.9
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 7.5e-124 448.0 388 59.3
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.3e-123 447.2 383 59.5
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-123 447.2 389 61.4
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.7e-123 446.8 408 57.4
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 2.9e-123 446.0 384 59.6
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.7e-123 445.7 384 59.6
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 3.7e-123 445.7 384 59.6
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 3.7e-123 445.7 384 59.6
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 3.7e-123 445.7 384 59.6
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.7e-123 445.7 384 58.9
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.7e-123 445.7 383 60.1
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 4.9e-123 445.3 388 59.8
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 8.3e-123 444.5 384 59.6
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 8.3e-123 444.5 384 59.6
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 8.3e-123 444.5 385 59.5
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.4e-122 443.7 388 61.3
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.4e-122 443.0 384 59.9
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 2.4e-122 443.0 384 59.6
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 7.0e-122 441.4 383 59.0
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 9.2e-122 441.0 388 59.3
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.2e-121 440.7 384 60.2
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-121 440.7 385 59.0
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.6e-121 440.3 383 59.0
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.6e-121 440.3 386 60.6
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.6e-121 440.3 384 59.9
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 2.7e-121 439.5 373 59.0
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 2.7e-121 439.5 384 60.7
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 7.8e-121 438.0 397 58.9
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.0e-120 437.6 384 59.4
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.0e-120 437.6 384 59.4
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 6.6e-120 434.9 383 59.8
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 4.3e-119 432.2 424 54.5
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.1e-117 427.6 392 58.4
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 3.1e-117 426.0 384 57.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 5.2e-117 425.2 380 57.6
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.0e-116 423.3 384 58.6
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.7e-115 420.2 379 58.6
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 4.9e-115 418.7 384 57.0
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 8.3e-115 417.9 405 56.3
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 4.6e-113 412.1 381 57.0
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.1e-109 401.0 387 52.5
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.4e-108 395.6 345 59.4
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 5.4e-106 388.7 376 55.6
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 3.9e-104 382.5 385 54.8
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.2e-98 362.8 288 62.2
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.4e-90 335.5 279 62.0
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 7.3e-87 325.1 405 46.9
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.1e-85 321.2 384 47.9
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.2e-84 317.8 393 46.3
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.1e-82 311.2 381 47.5
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.4e-82 310.1 377 46.2
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 8.1e-78 295.0 253 60.1
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 9.0e-77 291.6 341 48.4
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.5e-68 264.2 422 38.9
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.9e-58 230.7 245 49.8
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.0e-48 198.4 387 34.6
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 8.8e-48 195.3 383 33.7
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 7.4e-47 192.2 386 33.4
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.6e-44 183.7 159 60.4
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 2.5e-42 177.2 167 53.9
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 7.2e-42 175.6 325 33.5
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 3.9e-40 169.9 338 38.2
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 8.8e-40 168.7 215 42.8
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.8e-27 126.7 100 66.0
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 3.6e-25 120.2 93 64.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 8.3e-22 109.0 191 38.2
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.2e-14 84.3 49 87.8
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 2.4e-13 80.9 115 43.5
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 3.2e-13 80.5 56 67.9
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 5.0e-11 73.2 274 24.8
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 6.8e-08 62.8 66 57.6


User provided reference genes

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