Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 3.5e-126 454.9 218 100.0
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 2.1e-115 419.1 219 92.7
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 3.1e-98 362.1 219 79.5
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 3.1e-98 362.1 218 79.8
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 6.8e-98 360.9 219 79.5
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 1.2e-97 360.1 219 78.5
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 1.5e-97 359.8 219 79.9
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.0e-97 359.4 218 79.8
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 2.0e-97 359.4 217 79.7
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 2.6e-97 359.0 219 79.5
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 3.4e-97 358.6 219 78.5
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 4.4e-97 358.2 219 78.1
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 7.5e-97 357.5 219 77.2
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 9.8e-97 357.1 219 77.2
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.3e-96 356.7 219 76.7
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 1.7e-96 356.3 218 77.5
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 4.9e-96 354.8 219 78.1
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.1e-95 353.6 218 78.0
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 1.1e-95 353.6 219 75.3
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 1.1e-95 353.6 219 77.2
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.4e-95 353.2 218 77.5
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.9e-95 352.8 219 76.7
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 1.9e-95 352.8 219 76.7
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.4e-95 352.4 219 76.3
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.4e-95 352.4 219 74.4
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 3.2e-95 352.1 219 77.6
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 4.1e-95 351.7 219 78.1
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 5.4e-95 351.3 220 76.8
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.2e-94 350.1 219 77.2
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 2.0e-94 349.4 219 76.7
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.0e-94 349.4 219 77.2
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 2.7e-94 349.0 225 74.7
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.7e-94 349.0 218 73.4
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 2.7e-94 349.0 218 75.2
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 6.0e-94 347.8 219 75.3
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 6.0e-94 347.8 219 75.3
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 7.8e-94 347.4 231 72.7
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 7.8e-94 347.4 219 75.8
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.0e-93 347.1 219 77.2
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 2.3e-93 345.9 219 74.9
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 3.0e-93 345.5 219 74.9
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.9e-93 345.1 220 75.9
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 3.9e-93 345.1 219 77.2
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.0e-93 344.7 219 76.7
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 5.0e-93 344.7 219 75.8
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 5.0e-93 344.7 219 75.3
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 8.6e-93 344.0 219 75.8
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 8.6e-93 344.0 218 75.7
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 1.1e-92 343.6 219 75.3
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 1.1e-92 343.6 219 74.0
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.1e-92 343.6 219 76.7
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 1.5e-92 343.2 218 75.7
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.9e-92 342.8 218 77.5
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 2.5e-92 342.4 223 73.5
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 3.3e-92 342.0 223 73.5
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 4.3e-92 341.7 220 75.5
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 5.6e-92 341.3 217 75.1
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 1.2e-91 340.1 219 76.7
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 1.2e-91 340.1 219 77.2
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 1.6e-91 339.7 218 73.4
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 2.1e-91 339.3 218 74.3
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 2.8e-91 339.0 218 73.9
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 2.8e-91 339.0 218 73.9
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 2.8e-91 339.0 219 75.3
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 2.8e-91 339.0 219 74.4
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 4.7e-91 338.2 224 72.3
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 4.7e-91 338.2 218 74.3
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 8.1e-91 337.4 219 73.5
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.1e-90 337.0 212 75.9
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 1.1e-90 337.0 225 70.7
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 1.4e-90 336.7 218 74.3
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 1.8e-90 336.3 250 66.4
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 2.3e-90 335.9 219 75.3
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 3.1e-90 335.5 219 75.8
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 6.8e-90 334.3 217 74.2
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 8.9e-90 334.0 219 72.6
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.2e-89 333.6 227 72.7
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.2e-89 333.6 227 73.1
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 3.4e-89 332.0 223 71.3
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 4.4e-89 331.6 219 71.7
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 4.4e-89 331.6 224 71.0
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 7.5e-89 330.9 219 74.4
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 9.8e-89 330.5 227 72.7
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.3e-88 330.1 219 72.1
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 2.2e-88 329.3 218 72.0
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 2.2e-88 329.3 216 73.1
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 2.2e-88 329.3 219 70.8
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 4.9e-88 328.2 219 70.3
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 8.3e-88 327.4 219 70.8
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 2.4e-87 325.9 220 71.8
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 4.1e-87 325.1 232 69.4
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.1e-87 325.1 220 72.3
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 9.2e-87 323.9 219 70.3
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 1.6e-86 323.2 218 72.5
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 2.1e-86 322.8 232 69.0
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 2.7e-86 322.4 219 72.6
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 2.7e-86 322.4 226 69.0
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 3.5e-86 322.0 222 68.9
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.0e-85 320.5 220 69.5
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.7e-85 319.7 217 71.0
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 1.7e-85 319.7 221 67.4
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 8.6e-85 317.4 200 76.0
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 1.1e-84 317.0 217 71.9
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 1.9e-84 316.2 218 68.3
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 3.3e-84 315.5 217 71.4
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 7.3e-84 314.3 220 68.2
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 7.3e-84 314.3 217 68.2
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 4.7e-83 311.6 217 69.1
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 4.7e-83 311.6 217 69.1
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 6.2e-83 311.2 217 66.8
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 8.1e-83 310.8 217 67.3
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 1.1e-82 310.5 217 68.7
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 1.8e-82 309.7 217 68.7
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 5.2e-82 308.1 217 69.1
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 5.2e-82 308.1 217 69.1
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 6.8e-82 307.8 217 67.7
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.5e-81 306.6 217 67.3
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.5e-81 306.6 218 67.0
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 2.0e-81 306.2 217 67.3
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 2.0e-81 306.2 217 67.3
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 5.8e-81 304.7 217 66.8
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 5.8e-81 304.7 217 67.7
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 5.8e-81 304.7 218 66.5
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 1.7e-80 303.1 217 66.8
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.2e-78 297.0 192 74.0
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 3.5e-78 295.4 211 67.3
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 7.8e-78 294.3 187 75.4
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 7.8e-78 294.3 218 63.3
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 8.6e-77 290.8 212 67.9
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 3.3e-76 288.9 207 69.1
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.2e-75 287.0 183 74.9
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 3.6e-75 285.4 218 63.8
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 6.2e-75 284.6 222 64.0
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 8.9e-74 280.8 218 62.4
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 2.0e-73 279.6 199 70.9
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 1.3e-72 276.9 194 70.6
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 4.8e-67 258.5 176 68.8
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 6.4e-64 248.1 220 56.8
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 9.3e-63 244.2 217 54.8
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 2.7e-62 242.7 165 73.3
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 2.1e-59 233.0 224 52.7
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 6.2e-59 231.5 164 69.5
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.4e-58 230.3 165 66.1
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 6.9e-58 228.0 163 67.5
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.3e-56 223.8 220 50.9
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 1.7e-56 223.4 165 64.8
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 1.1e-55 220.7 189 58.7
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 1.1e-52 210.7 165 64.8
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 4.8e-51 205.3 159 64.8
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 4.2e-47 192.2 149 63.1
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 2.1e-43 179.9 186 50.5
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 7.2e-39 164.9 136 61.8
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 3.3e-36 156.0 170 51.8
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 9.1e-34 147.9 289 32.5
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 3.6e-30 136.0 63 93.7
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 5.0e-16 89.0 129 42.6
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 8.5e-16 88.2 263 27.4
BraA04t17717Z Brassica rapa HOM05D003665 ORTHO05D040370 1.6e-09 67.4 64 53.1
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 4.5e-09 65.9 35 82.9
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 3.8e-08 62.8 32 84.4
C04p57550 Brassica napus HOM05D003665 ORTHO05D040370 8.5e-08 61.6 41 63.4


User provided reference genes

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