Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 7.5e-193 677.2 380 100.0
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 9.4e-79 298.1 557 42.0
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 6.1e-78 295.4 533 40.9
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.0e-77 294.7 553 37.6
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 4.1e-74 282.7 551 36.7
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 3.5e-73 279.6 553 35.8
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.7e-72 277.3 554 36.1
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.1e-71 274.6 407 42.8
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 7.2e-71 271.9 528 35.4
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 4.0e-69 266.2 547 35.3
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 3.4e-68 263.1 553 35.1
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 3.4e-68 263.1 561 34.8
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 5.7e-68 262.3 401 44.1
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.4e-66 256.9 520 37.9
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 9.2e-66 255.0 527 35.1
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.0e-65 253.8 552 35.5
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.0e-65 253.8 537 34.5
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 2.0e-65 253.8 583 34.0
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 5.9e-65 252.3 578 34.6
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.3e-64 251.1 548 33.9
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.3e-64 250.4 523 34.2
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 2.9e-64 250.0 450 37.1
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 2.9e-64 250.0 554 34.5
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.9e-64 249.6 556 35.1
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 5.0e-64 249.2 546 37.4
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.1e-63 248.1 542 34.1
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.5e-63 247.7 544 33.3
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.6e-63 245.7 517 34.6
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 7.3e-63 245.4 536 34.0
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.2e-62 244.6 547 33.6
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.6e-62 244.2 515 35.3
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 3.6e-62 243.0 590 34.9
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.7e-62 242.7 582 33.7
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 6.1e-62 242.3 542 33.4
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.0e-61 241.5 609 31.9
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.4e-61 241.1 556 37.1
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.8e-61 240.7 536 33.4
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.3e-61 240.4 577 33.3
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.1e-61 240.0 531 34.7
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.0e-61 239.6 580 33.1
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 6.8e-61 238.8 559 33.5
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 8.9e-61 238.4 538 34.0
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.5e-60 237.7 562 32.9
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.5e-60 237.7 548 33.6
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.5e-60 237.7 367 40.6
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 2.0e-60 237.3 525 34.7
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 3.4e-60 236.5 575 32.2
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 7.5e-60 235.3 451 36.4
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 2.2e-59 233.8 529 34.2
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.9e-59 233.4 156 72.4
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.9e-59 233.4 561 36.4
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.9e-59 232.6 538 33.1
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 6.4e-59 232.3 156 71.8
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 8.3e-59 231.9 450 35.1
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 8.3e-59 231.9 130 82.3
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 8.3e-59 231.9 525 34.1
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.4e-58 231.1 542 33.9
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 3.2e-58 229.9 576 31.9
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 5.4e-58 229.2 342 41.5
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 5.4e-58 229.2 522 32.8
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.0e-57 227.3 368 39.4
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 2.0e-57 227.3 426 35.0
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.0e-57 227.3 540 34.6
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.0e-57 227.3 546 31.7
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 4.6e-57 226.1 558 33.0
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 4.6e-57 226.1 359 39.8
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 4.6e-57 226.1 359 39.8
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 6.0e-57 225.7 543 33.0
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 7.8e-57 225.3 534 33.9
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.0e-56 224.9 544 32.4
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.0e-56 224.9 129 74.4
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.3e-56 224.6 524 33.2
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.7e-56 224.2 525 34.5
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.7e-56 224.2 550 32.9
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 1.7e-56 224.2 582 31.3
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.3e-56 223.8 155 69.0
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 3.0e-56 223.4 357 39.8
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 3.0e-56 223.4 357 39.8
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.0e-56 223.4 524 33.0
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 3.9e-56 223.0 546 32.8
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 3.9e-56 223.0 627 30.6
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.6e-56 222.2 130 79.2
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.6e-56 222.2 178 62.9
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.6e-56 222.2 523 34.2
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 8.6e-56 221.9 130 77.7
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 8.6e-56 221.9 130 77.7
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.1e-55 221.5 130 77.7
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.5e-55 221.1 130 78.5
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.9e-55 220.7 131 77.1
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 2.5e-55 220.3 130 77.7
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 3.3e-55 219.9 433 37.6
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 5.6e-55 219.2 129 73.6
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 7.3e-55 218.8 530 32.6
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 7.3e-55 218.8 131 74.8
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.2e-54 218.0 466 35.0
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.6e-54 217.6 130 77.7
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.6e-54 217.6 130 74.6
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.1e-54 217.2 530 31.7
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.8e-54 216.9 130 75.4
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 3.6e-54 216.5 445 35.3
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.6e-54 216.5 530 31.7
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.6e-54 216.5 534 33.3
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.7e-54 216.1 534 33.3
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 6.2e-54 215.7 131 74.8
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 8.0e-54 215.3 130 76.9
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 3.1e-53 213.4 130 73.8
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.8e-53 212.2 130 73.8
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 8.9e-53 211.8 399 35.6
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.2e-52 211.5 558 32.4
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.5e-52 211.1 540 31.1
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 2.6e-52 210.3 156 64.1
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 2.6e-52 210.3 130 72.3
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 3.4e-52 209.9 157 65.0
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.3e-51 208.0 591 29.8
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 1.3e-51 208.0 128 74.2
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.9e-51 206.8 128 75.0
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.1e-50 204.9 128 71.9
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 3.2e-50 203.4 128 71.1
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.1e-50 203.0 130 70.8
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.6e-49 201.1 130 69.2
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 6.0e-49 199.1 511 31.3
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 7.8e-49 198.7 147 62.6
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 5.1e-48 196.1 146 61.0
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.1e-47 194.9 132 65.2
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 1.1e-47 194.9 235 46.0
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 5.6e-47 192.6 132 64.4
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 9.5e-47 191.8 132 63.6
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.1e-46 190.7 132 64.4
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 6.2e-46 189.1 132 64.4
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 8.1e-46 188.7 478 36.6
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.1e-45 188.3 132 64.4
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 5.2e-45 186.0 132 64.4
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 8.9e-45 185.3 130 64.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 8.9e-45 185.3 130 64.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 8.9e-45 185.3 130 64.6
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 8.9e-45 185.3 130 64.6
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.2e-44 184.9 138 61.6
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 4.4e-44 183.0 132 62.9
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.7e-43 179.9 132 62.9
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 3.7e-43 179.9 132 62.9
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 3.7e-43 179.9 132 62.9
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.7e-43 179.9 132 62.9
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 3.2e-42 176.8 153 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 2.1e-41 174.1 129 58.1
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.0e-40 171.8 294 39.5
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.9e-40 169.9 101 75.2
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 5.6e-39 166.0 103 74.8
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 1.3e-35 154.8 129 57.4
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.4e-34 151.4 128 62.5
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.5e-33 146.7 176 43.8
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 4.6e-33 146.4 88 73.9
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.0e-33 146.0 82 81.7
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.5e-28 131.3 249 37.8
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 3.8e-27 126.7 69 82.6
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 9.3e-26 122.1 253 38.7
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 3.9e-24 116.7 71 77.5
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 5.6e-23 112.8 224 37.5
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.7e-19 101.3 537 24.0
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.4e-15 85.9 53 71.7
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 5.3e-13 79.7 287 30.3
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.5e-12 78.2 251 29.5
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 2.6e-12 77.4 111 36.0
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 4.9e-11 73.2 54 68.5
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.1e-10 72.0 285 28.8
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.2e-10 70.5 283 29.7
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 7.1e-10 69.3 132 38.6
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.6e-09 68.2 302 29.8
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.9e-08 63.5 145 32.4


User provided reference genes

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