Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.3e-221 771.9 396 100.0
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 6.3e-142 508.1 295 86.1
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 5.3e-141 505.0 282 89.4
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 1.7e-139 500.0 331 80.1
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 2.9e-139 499.2 293 85.0
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 1.4e-138 496.9 284 87.3
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 2.5e-138 496.1 295 84.4
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.7e-137 492.7 314 85.0
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 2.7e-137 492.7 314 85.0
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.8e-136 490.0 294 83.7
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.7e-134 483.4 298 83.2
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 2.4e-133 479.6 284 84.9
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.0e-132 476.5 284 84.2
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 5.0e-131 471.9 293 81.9
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.2e-130 469.2 293 80.9
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 1.4e-128 463.8 286 83.6
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.2e-126 456.4 284 83.1
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 2.2e-126 456.4 284 80.6
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.8e-126 456.1 282 81.9
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 3.1e-125 452.6 282 81.2
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.2e-124 450.7 279 81.7
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 3.5e-124 449.1 283 80.6
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 4.5e-124 448.7 282 81.6
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 7.7e-124 448.0 278 83.1
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.3e-123 447.2 281 80.1
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 1.3e-123 447.2 295 79.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 2.9e-123 446.0 274 83.9
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 2.9e-123 446.0 274 83.9
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 2.9e-123 446.0 274 83.9
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 6.5e-123 444.9 256 87.1
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-122 443.0 272 82.0
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 9.4e-122 441.0 274 82.8
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 1.0e-120 437.6 270 81.5
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 1.0e-120 437.6 270 81.5
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 1.0e-120 437.6 270 81.5
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 1.0e-120 437.6 270 81.5
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 1.0e-120 437.6 270 81.5
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 1.0e-120 437.6 270 81.5
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 6.7e-120 434.9 283 79.5
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 3.3e-119 432.6 278 84.5
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 3.3e-119 432.6 278 84.5
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.7e-118 430.3 256 83.6
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 6.3e-118 428.3 321 71.7
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.3e-118 428.3 286 77.6
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 5.0e-115 418.7 261 81.6
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 3.2e-114 416.0 260 83.1
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 9.4e-114 414.5 260 82.3
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 4.7e-113 412.1 286 76.9
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.4e-112 410.6 265 78.1
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 8.8e-112 407.9 283 73.5
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.5e-111 404.8 260 81.2
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.5e-111 404.8 260 81.2
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 3.7e-110 402.5 260 80.8
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 3.7e-110 402.5 260 80.8
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 3.7e-110 402.5 260 80.8
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 4.8e-110 402.1 256 81.6
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.8e-109 400.2 255 78.8
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.8e-109 400.2 257 80.9
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 4.5e-108 395.6 278 74.8
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 4.7e-105 385.6 228 84.6
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.8e-104 383.6 292 74.3
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 1.2e-97 360.9 232 80.2
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.3e-94 348.6 278 68.0
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.8e-93 347.1 229 78.6
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-91 340.5 286 70.3
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.1e-89 332.0 284 63.4
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 2.3e-80 303.5 183 84.2
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 7.5e-79 298.5 235 70.2
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.7e-78 296.2 255 63.1
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 3.0e-75 286.6 256 66.8
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 3.0e-75 286.6 256 66.8
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.6e-75 285.4 178 79.2
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.2e-73 281.2 282 57.1
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 3.1e-72 276.6 217 73.7
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.9e-69 267.3 152 88.2
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.4e-69 266.9 243 62.6
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 8.1e-65 251.9 157 82.2
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 1.1e-64 251.5 153 82.4
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.3e-59 234.6 267 52.4
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 1.7e-59 234.2 154 78.6
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-58 230.3 151 78.8
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.3e-58 229.6 196 64.3
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 6.2e-57 225.7 172 70.3
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.7e-54 217.6 123 85.4
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.9e-54 216.9 146 76.7
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.8e-49 200.3 122 77.9
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 3.8e-46 189.9 117 82.1
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 2.4e-45 187.2 111 81.1
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 2.7e-44 183.7 107 86.0
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-43 181.4 112 79.5
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.2e-41 172.6 106 83.0
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.8e-39 166.0 141 63.1
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 9.3e-37 158.7 108 78.7
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 9.3e-37 158.7 108 78.7
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 4.6e-36 156.4 91 86.8
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 1.9e-34 151.0 93 80.6
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-34 150.6 92 81.5
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 4.3e-34 149.8 87 87.4
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 4.3e-34 149.8 96 79.2
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.3e-33 148.3 93 80.6
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-33 148.3 150 53.3
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.0e-27 127.1 70 85.7
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 4.1e-24 116.7 75 73.3
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 9.0e-24 115.5 59 94.9
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 1.2e-23 115.2 65 89.2
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-21 107.5 116 54.3
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.2e-20 105.1 59 83.1
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 2.2e-17 94.4 66 68.2
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 3.7e-17 93.6 70 64.3
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 2.4e-16 90.9 47 91.5
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 6.9e-16 89.4 79 60.8
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 9.1e-16 89.0 81 59.3
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 4.2e-13 80.1 46 82.6
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 5.5e-13 79.7 67 59.7
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 2.1e-12 77.8 44 86.4
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 6.1e-12 76.3 52 73.1
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 3.0e-11 73.9 81 54.3
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 1.3e-09 68.6 55 69.1
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 1.4e-08 65.1 71 52.1
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 9.1e-08 62.4 167 30.5
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.0e-06 58.9 34 76.5
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.0e-06 58.9 34 76.5
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.0e-06 58.9 34 76.5


User provided reference genes

Program Settings