Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 9.0e-81 303.5 152 100.0
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.9e-30 136.3 155 56.1
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.6e-29 133.3 153 53.6
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 4.0e-28 128.6 149 50.3
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.1e-25 120.6 154 49.4
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.4e-25 120.2 150 48.0
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 5.9e-24 114.8 148 48.6
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 7.7e-24 114.4 150 52.0
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 5.0e-23 111.7 142 50.7
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 1.9e-22 109.8 145 44.8
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 2.1e-21 106.3 146 46.6
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 6.1e-21 104.8 148 47.3
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 6.1e-21 104.8 129 51.2
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 6.1e-21 104.8 129 51.2
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.4e-20 103.6 129 50.4
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.8e-20 103.2 103 55.3
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 1.8e-20 103.2 124 54.8
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.3e-20 102.8 155 43.2
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 2.3e-20 102.8 149 47.7
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.0e-20 102.4 101 55.4
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 4.0e-20 102.1 103 55.3
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 4.0e-20 102.1 137 44.5
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 4.0e-20 102.1 147 47.6
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 5.2e-20 101.7 95 57.9
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 8.8e-20 100.9 155 42.6
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 8.8e-20 100.9 154 43.5
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.2e-19 100.5 95 57.9
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.2e-19 100.5 95 57.9
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 2.0e-19 99.8 152 42.1
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 2.6e-19 99.4 148 45.9
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 4.4e-19 98.6 159 41.5
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 5.7e-19 98.2 147 49.0
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 5.7e-19 98.2 96 59.4
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 5.7e-19 98.2 135 48.9
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 7.5e-19 97.8 92 60.9
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 9.8e-19 97.4 146 43.2
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.3e-18 97.1 97 58.8
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 2.2e-18 96.3 148 45.3
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 3.7e-18 95.5 96 54.2
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 3.7e-18 95.5 96 57.3
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 4.9e-18 95.1 97 55.7
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 4.9e-18 95.1 148 43.2
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 4.9e-18 95.1 97 55.7
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 8.3e-18 94.4 92 54.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.1e-17 94.0 98 55.1
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.1e-17 94.0 133 45.9
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.8e-17 93.2 99 54.5
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.8e-17 93.2 99 54.5
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.8e-17 93.2 152 42.1
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 2.4e-17 92.8 104 50.0
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 3.1e-17 92.4 153 44.4
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 4.1e-17 92.0 150 42.0
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 5.4e-17 91.7 95 52.6
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 5.4e-17 91.7 95 55.8
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 7.0e-17 91.3 96 55.2
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 7.0e-17 91.3 139 46.0
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 9.2e-17 90.9 97 53.6
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.2e-16 90.5 99 52.5
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.2e-16 90.5 95 54.7
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 1.6e-16 90.1 137 41.6
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 2.0e-16 89.7 138 42.0
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.7e-16 89.4 96 55.2
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 3.5e-16 89.0 79 63.3
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 3.5e-16 89.0 155 44.5
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 3.5e-16 89.0 92 57.6
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 4.5e-16 88.6 148 43.2
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 5.9e-16 88.2 131 44.3
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 5.9e-16 88.2 114 49.1
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 7.8e-16 87.8 80 62.5
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 7.8e-16 87.8 95 53.7
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 1.0e-15 87.4 149 38.9
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 1.0e-15 87.4 79 60.8
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.3e-15 87.0 99 52.5
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.3e-15 87.0 116 47.4
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.3e-15 87.0 80 63.8
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.7e-15 86.7 81 61.7
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 1.7e-15 86.7 148 41.2
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 2.3e-15 86.3 100 52.0
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 2.9e-15 85.9 87 57.5
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 2.9e-15 85.9 102 51.0
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.6e-15 84.7 99 50.5
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.6e-15 84.7 99 50.5
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 6.6e-15 84.7 95 50.5
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.5e-14 83.6 97 49.5
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 1.5e-14 83.6 81 63.0
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 1.9e-14 83.2 108 48.1
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.9e-14 83.2 99 49.5
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.9e-14 83.2 150 41.3
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.9e-14 83.2 85 58.8
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 3.3e-14 82.4 95 50.5
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 3.3e-14 82.4 113 52.2
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 4.3e-14 82.0 95 50.5
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 4.3e-14 82.0 96 51.0
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 5.6e-14 81.6 81 56.8
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 7.3e-14 81.3 95 50.5
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 9.5e-14 80.9 83 55.4
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 1.2e-13 80.5 95 51.6
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 2.1e-13 79.7 94 51.1
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 2.1e-13 79.7 98 49.0
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.8e-13 79.3 95 49.5
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 3.6e-13 79.0 86 53.5
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.6e-13 79.0 107 47.7
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.6e-13 79.0 86 55.8
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 4.7e-13 78.6 86 52.3
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 4.7e-13 78.6 89 49.4
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 4.7e-13 78.6 86 52.3
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 6.1e-13 78.2 86 52.3
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 6.1e-13 78.2 86 52.3
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 6.1e-13 78.2 86 52.3
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 6.1e-13 78.2 86 52.3
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 8.0e-13 77.8 82 52.4
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 8.0e-13 77.8 119 40.3
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.0e-12 77.4 95 48.4
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 1.0e-12 77.4 84 57.1
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.4e-12 77.0 89 48.3
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 1.4e-12 77.0 89 48.3
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 2.3e-12 76.3 78 59.0
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 2.3e-12 76.3 80 55.0
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 3.0e-12 75.9 109 43.1
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 6.8e-12 74.7 89 47.2
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 1.2e-11 73.9 72 63.9
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 2.0e-11 73.2 126 40.5
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.0e-11 73.2 139 38.8
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 4.4e-11 72.0 81 55.6
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.4e-09 67.0 82 48.8
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 1.6e-08 63.5 92 44.6
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.0e-08 63.2 80 51.2
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 4.6e-08 62.0 115 40.9
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 1.3e-07 60.5 149 35.6
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 3.9e-07 58.9 72 52.8
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 1.1e-06 57.4 78 46.2
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.5e-06 57.0 80 41.2
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 3.3e-06 55.8 72 50.0
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 9.5e-06 54.3 68 51.5


User provided reference genes

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