Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 5.1e-102 374.4 187 100.0
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 88.2
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 85.6
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 85.6
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 85.6
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 87.2
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 1.3e-92 343.2 186 87.1
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 87.7
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 86.1
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 85.0
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.2
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.2
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 87.7
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 84.5
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 85.0
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 87.2
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 86.6
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 87.2
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 86.1
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 86.1
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 85.6
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 86.6
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 86.1
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 6.2e-92 340.9 187 86.6
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 6.2e-92 340.9 187 86.1
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 8.2e-92 340.5 187 87.7
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.6
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.1
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.1
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.1
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 85.6
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 85.6
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 86.1
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 86.1
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 86.1
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 86.6
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 85.0
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 85.6
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 84.5
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 86.1
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 85.6
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 85.6
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 85.0
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 5.3e-91 337.8 184 86.4
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 86.1
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 85.6
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 84.5
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 85.6
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 85.6
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 85.6
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 9.0e-91 337.0 196 83.7
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 9.0e-91 337.0 187 85.0
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 9.0e-91 337.0 187 85.6
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 1.2e-90 336.7 187 85.0
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 1.2e-90 336.7 187 84.5
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.5e-90 336.3 183 86.3
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 84.5
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 84.5
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 84.5
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 84.5
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 86.1
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 2.6e-90 335.5 187 85.0
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 3.4e-90 335.1 187 83.4
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 3.4e-90 335.1 187 84.5
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 85.0
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 85.0
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 85.0
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 4.5e-90 334.7 186 85.5
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 5.8e-90 334.3 187 85.0
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 5.8e-90 334.3 187 84.5
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 5.8e-90 334.3 200 80.0
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 7.6e-90 334.0 187 84.5
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.3e-89 333.2 187 85.0
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 1.3e-89 333.2 187 84.5
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 1.3e-89 333.2 187 85.0
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 84.5
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 84.5
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 84.5
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 82.9
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 2.2e-89 332.4 187 84.0
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.2e-89 332.4 185 85.9
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.2e-89 332.4 187 84.5
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.9e-89 332.0 187 84.0
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 2.9e-89 332.0 187 85.0
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 2.9e-89 332.0 187 83.4
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 5.0e-89 331.3 187 84.0
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 5.0e-89 331.3 187 84.0
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 5.0e-89 331.3 187 84.0
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 5.0e-89 331.3 187 84.0
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.1e-88 330.1 187 82.9
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 1.1e-88 330.1 187 84.0
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 1.1e-88 330.1 187 84.0
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.4e-88 329.7 187 82.4
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.4e-88 329.7 187 83.4
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.4e-88 329.7 187 83.4
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 1.4e-88 329.7 187 82.9
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 2.5e-88 328.9 186 83.9
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 3.2e-88 328.6 201 79.6
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 4.2e-88 328.2 187 82.4
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 4.2e-88 328.2 187 82.9
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 5.5e-88 327.8 187 81.8
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 5.5e-88 327.8 187 81.8
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 5.5e-88 327.8 187 81.8
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 7.1e-88 327.4 181 84.5
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 9.3e-88 327.0 203 78.8
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.6e-87 326.2 183 84.2
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.6e-87 326.2 183 84.2
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 2.7e-87 325.5 185 82.7
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 3.5e-87 325.1 187 81.8
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 3.5e-87 325.1 185 82.2
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 6.1e-87 324.3 206 77.2
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 1.8e-86 322.8 187 81.8
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 3.9e-86 321.6 193 79.8
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 1.9e-85 319.3 206 75.7
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.3e-85 318.5 208 75.0
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 3.3e-85 318.5 183 83.1
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 5.7e-85 317.8 186 80.6
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.8e-83 312.8 187 78.1
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.1e-83 312.0 211 73.0
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 6.9e-83 310.8 241 66.0
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 2.9e-81 305.4 173 82.1
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.9e-81 305.4 167 87.4
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 1.9e-80 302.8 185 77.3
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.2e-79 300.1 169 84.6
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.4e-78 296.6 187 76.5
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.4e-78 296.6 187 76.5
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 6.7e-78 294.3 187 73.8
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.5e-77 292.4 187 75.4
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 3.7e-76 288.5 187 77.5
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.1e-75 283.9 172 77.9
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 2.6e-74 282.3 187 72.7
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.2e-73 279.3 187 72.7
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 5.0e-73 278.1 154 85.7
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 6.5e-73 277.7 158 85.4
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 5.5e-72 274.6 149 89.3
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.5e-72 274.6 187 72.2
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.2e-71 273.5 177 72.9
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 3.6e-71 271.9 186 73.1
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 3.9e-70 268.5 187 71.1
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 4.4e-69 265.0 187 69.0
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 1.3e-68 263.5 214 61.2
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.3e-68 263.5 148 83.8
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 7.2e-64 247.7 158 74.7
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 4.7e-63 245.0 187 66.8
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 3.1e-59 232.3 185 60.0
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 8.5e-57 224.2 187 61.0
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 3.2e-56 222.2 124 86.3
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.7e-53 211.5 133 77.4
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.1e-51 207.2 106 98.1
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 4.2e-48 195.3 167 55.1
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.1e-47 193.0 103 84.5
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 6.1e-47 191.4 175 56.0
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 2.8e-44 182.6 139 64.7
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 8.3e-44 181.0 103 79.6
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.1e-43 180.6 98 82.7
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.4e-43 179.5 181 55.2
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 5.9e-42 174.9 98 82.7
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.6e-37 159.5 85 94.1
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 1.1e-27 127.5 135 54.1
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 9.8e-21 104.4 68 72.1
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 9.2e-19 97.8 52 90.4
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.3e-17 94.0 52 88.5
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 3.0e-17 92.8 49 91.8
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 3.1e-14 82.8 45 86.7
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.7e-12 77.0 41 82.9
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 4.9e-12 75.5 74 59.5
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 8.4e-12 74.7 47 76.6
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 5.4e-11 72.0 41 78.0
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 4.6e-10 68.9 68 52.9
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 6.0e-10 68.6 39 74.4


User provided reference genes

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