Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0159 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 7.8e-65 250.4 131 100.0
CDE06G1045 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 1.4e-42 176.4 103 89.3
TAR633G0303 Trochodendron aralioides HOM05D001245 ORTHO05D004900 8.4e-27 124.0 106 66.0
TPR.G13758 Trifolium pratense HOM05D001245 ORTHO05D004900 6.0e-25 117.9 139 53.2
Ca_18972_v3 Cicer arietinum L. HOM05D001245 ORTHO05D004900 7.9e-25 117.5 105 62.9
COL.COLO4_05366 Corchorus olitorius HOM05D001245 ORTHO05D004900 4.3e-23 111.7 131 55.0
Psat7g172200 Pisum sativum HOM05D001245 ORTHO05D004900 4.3e-23 111.7 92 63.0
Thecc.09G237500 Theobroma cacao HOM05D001245 ORTHO05D004900 4.3e-23 111.7 131 55.0
arahy.Tifrunner.gnm1.ann1.J55WMV Arachis hypogaea HOM05D001245 ORTHO05D004900 5.6e-23 111.3 101 63.4
Gorai.006G127100 Gossypium raimondii HOM05D001245 ORTHO05D004900 5.6e-23 111.3 118 55.9
MBI17_g18830_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004900 5.6e-23 111.3 94 66.0
arahy.Tifrunner.gnm1.ann1.9YG71W Arachis hypogaea HOM05D001245 ORTHO05D004900 9.6e-23 110.5 101 62.4
Actinidia16343 Actinidia chinensis HOM05D001245 ORTHO05D004900 1.3e-22 110.2 125 53.6
Gohir.A09G113000 Gossypium hirsutum HOM05D001245 ORTHO05D004900 1.3e-22 110.2 118 55.1
Lj3g0006919 Lotus japonicus HOM05D001245 ORTHO05D004900 2.1e-22 109.4 138 52.9
TAR623G0953 Trochodendron aralioides HOM05D001245 ORTHO05D004900 6.2e-22 107.8 124 54.0
Manes.06G162500 Manihot esculenta HOM05D001245 ORTHO05D004900 1.1e-21 107.1 122 52.5
Atru.chr3.2671_Atru.chr3.2672 Acer truncatum HOM05D001245 ORTHO05D004900 1.4e-21 106.7 129 54.3
Actinidia06921 Actinidia chinensis HOM05D001245 ORTHO05D004900 1.4e-21 106.7 124 51.6
Dinv36237 Davidia involucrata HOM05D001245 ORTHO05D004900 1.4e-21 106.7 94 66.0
Potri.009G051500 Populus trichocarpa HOM05D001245 ORTHO05D004900 1.4e-21 106.7 108 59.3
Sc06g0004620 Simmondsia chinensis HOM05D001245 ORTHO05D004900 1.4e-21 106.7 128 53.1
Manes.14G003900 Manihot esculenta HOM05D001245 ORTHO05D004900 1.8e-21 106.3 106 57.5
Phvul.011G022700 Phaseolus vulgaris HOM05D001245 ORTHO05D004900 2.4e-21 105.9 144 49.3
QL01p004208 Quercus lobata HOM05D001245 ORTHO05D004900 4.0e-21 105.1 138 50.7
VMungo1127G1052 Vigna mungo HOM05D001245 ORTHO05D004900 4.0e-21 105.1 144 49.3
Cpa.g.sc84.35 Carica papaya HOM05D001245 ORTHO05D004900 5.3e-21 104.8 93 66.7
Glyma.11G093600 Glycine max HOM05D001245 ORTHO05D004900 5.3e-21 104.8 138 52.2
Glyma.12G020100 Glycine max HOM05D001245 ORTHO05D004900 5.3e-21 104.8 138 51.4
PGR119G2403 Punica granatum HOM05D001245 ORTHO05D004900 6.9e-21 104.4 106 58.5
Hund22008 Selenicereus undatus HOM05D001245 ORTHO05D004900 6.9e-21 104.4 81 67.9
TWI32G0811 Tripterygium wilfordii HOM05D001245 ORTHO05D004900 6.9e-21 104.4 120 51.7
Aqoxy2G00231 Aquilegia oxysepala HOM05D001245 ORTHO05D004900 9.0e-21 104.0 84 69.0
Prupe.4G254100 Prunus persica HOM05D001245 ORTHO05D004900 9.0e-21 104.0 114 54.4
Gohir.D05G072700 Gossypium hirsutum HOM05D001245 ORTHO05D004900 1.2e-20 103.6 129 51.2
CSS0024429 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004900 2.0e-20 102.8 107 55.1
CiPaw.14G117400 Carya illinoinensis HOM05D001245 ORTHO05D004900 2.0e-20 102.8 100 62.0
Haze_23162 Corylus avellana HOM05D001245 ORTHO05D004900 3.4e-20 102.1 84 64.3
Lalb_Chr19g0139801 Lupinus albus HOM05D001245 ORTHO05D004900 3.4e-20 102.1 107 57.9
Medtr4g076990 Medicago truncatula HOM05D001245 ORTHO05D004900 3.4e-20 102.1 114 56.1
Gohir.A05G069800 Gossypium hirsutum HOM05D001245 ORTHO05D004900 5.8e-20 101.3 106 56.6
vmacro04136 Vaccinium macrocarpon HOM05D001245 ORTHO05D004900 5.8e-20 101.3 92 58.7
GSVIVG01025236001 Vitis vinifera HOM05D001245 ORTHO05D004900 5.8e-20 101.3 93 62.4
Sc16g0011310 Simmondsia chinensis HOM05D001245 ORTHO05D004900 7.6e-20 100.9 118 52.5
Dinv22163 Davidia involucrata HOM05D001245 ORTHO05D004900 1.3e-19 100.1 101 55.4
PSO339G0578 Papaver somniferum HOM05D001245 ORTHO05D004900 1.3e-19 100.1 106 58.5
PSO384G2906 Papaver somniferum HOM05D001245 ORTHO05D004900 1.3e-19 100.1 106 58.5
Cfa009791 Carpinus fangiana HOM05D001245 ORTHO05D004900 2.9e-19 99.0 101 57.4
Migut.D00621 Erythranthe guttata HOM05D001245 ORTHO05D004900 2.9e-19 99.0 89 59.6
Gorai.009G073700 Gossypium raimondii HOM05D001245 ORTHO05D004900 2.9e-19 99.0 129 49.6
Lj2C626G1 Lonicera japonica HOM05D001245 ORTHO05D004900 2.9e-19 99.0 87 62.1
Sabra09G0037600 Salix brachista HOM05D001245 ORTHO05D004900 2.9e-19 99.0 102 58.8
Hund07492 Selenicereus undatus HOM05D001245 ORTHO05D004900 2.9e-19 99.0 90 62.2
Cc01_g04860 Coffea canephora HOM05D001245 ORTHO05D004900 3.8e-19 98.6 88 62.5
Duzib170G0912 Durio zibethinus HOM05D001245 ORTHO05D004900 4.9e-19 98.2 111 56.8
HanXRQChr11g0343641 Helianthus annuus HOM05D001245 ORTHO05D004900 4.9e-19 98.2 91 61.5
Nn2g15212 Nelumbo nucifera HOM05D001245 ORTHO05D004900 4.9e-19 98.2 104 57.7
TWI60G0980 Tripterygium wilfordii HOM05D001245 ORTHO05D004900 6.5e-19 97.8 115 51.3
ECA248G2887 Erigeron canadensis HOM05D001245 ORTHO05D004900 8.4e-19 97.4 93 64.5
SGA_v2.0_scaffold1G00741 Striga asiatica HOM05D001245 ORTHO05D004900 1.1e-18 97.1 92 57.6
SGA_v2.0_scaffold29G12323 Striga asiatica HOM05D001245 ORTHO05D004900 1.1e-18 97.1 96 58.3
CsaV3_1G042920 Cucumis sativus L. HOM05D001245 ORTHO05D004900 1.4e-18 96.7 106 57.5
DCAR_024415 Daucus carota HOM05D001245 ORTHO05D004900 1.4e-18 96.7 93 61.3
Sopen01g004100 Solanum pennellii HOM05D001245 ORTHO05D004900 1.4e-18 96.7 81 63.0
THA.LOC104817912 Tarenaya hassleriana HOM05D001245 ORTHO05D004900 1.4e-18 96.7 117 53.0
DCAR_002082 Daucus carota HOM05D001245 ORTHO05D004900 1.9e-18 96.3 90 55.6
FvH4_3g28510 Fragaria vesca HOM05D001245 ORTHO05D004900 1.9e-18 96.3 115 52.2
FAN11G1174 Fragaria x ananassa HOM05D001245 ORTHO05D004900 1.9e-18 96.3 115 52.2
AT3G21070 Arabidopsis thaliana HOM05D001245 ORTHO05D004900 2.5e-18 95.9 124 50.8
ClCG03G013120 Citrullus lanatus HOM05D001245 ORTHO05D004900 2.5e-18 95.9 106 57.5
Solyc01g008560.3 Solanum lycopersicum HOM05D001245 ORTHO05D004900 2.5e-18 95.9 99 56.6
Ah.06g193940 Amaranthus hybridus HOM05D001245 ORTHO05D004900 3.2e-18 95.5 92 59.8
MELO3C015180.2 Cucumis melo HOM05D001245 ORTHO05D004900 3.2e-18 95.5 106 57.5
Eucgr.J00748 Eucalyptus grandis HOM05D001245 ORTHO05D004900 4.2e-18 95.1 103 57.3
Sed0004060 Sechium edule HOM05D001245 ORTHO05D004900 4.2e-18 95.1 106 56.6
FAN21G1833 Fragaria x ananassa HOM05D001245 ORTHO05D004900 5.5e-18 94.7 115 51.3
FAN25G0433 Fragaria x ananassa HOM05D001245 ORTHO05D004900 5.5e-18 94.7 115 51.3
Potri.001G256100 Populus trichocarpa HOM05D001245 ORTHO05D004900 7.1e-18 94.4 106 53.8
Sp3g19030 Schrenkiella parvula HOM05D001245 ORTHO05D004900 9.3e-18 94.0 125 52.0
PGSC0003DMG400010485 Solanum tuberosum HOM05D001245 ORTHO05D004900 9.3e-18 94.0 99 55.6
Thhalv10020469m.g Eutrema salsugineum HOM05D001245 ORTHO05D004900 1.2e-17 93.6 108 55.6
FAN16G0752 Fragaria x ananassa HOM05D001245 ORTHO05D004900 1.6e-17 93.2 115 50.4
HanXRQChr01g0023921 Helianthus annuus HOM05D001245 ORTHO05D004900 1.6e-17 93.2 93 59.1
Lsat_1_v5_gn_1_77681 Lactuca sativa HOM05D001245 ORTHO05D004900 1.6e-17 93.2 123 50.4
MD03G1172500 Malus domestica HOM05D001245 ORTHO05D004900 1.6e-17 93.2 111 49.5
BcaB04g19134 Brassica carinata HOM05D001245 ORTHO05D004900 2.7e-17 92.4 141 49.6
CAN.G821.1 Capsicum annuum HOM05D001245 ORTHO05D004900 2.7e-17 92.4 113 51.3
Peaxi162Scf00032g00821 Petunia axillaris HOM05D001245 ORTHO05D004900 2.7e-17 92.4 81 61.7
RcHm_v2.0_Chr5g0052801 Rosa chinensis HOM05D001245 ORTHO05D004900 3.5e-17 92.0 114 51.8
unitig_0.g293 Utricularia gibba HOM05D001245 ORTHO05D004900 3.5e-17 92.0 82 59.8
EL10Ac4g10216 Beta vulgaris HOM05D001245 ORTHO05D004900 4.6e-17 91.7 91 61.5
EL10Ac4g10221 Beta vulgaris HOM05D001245 ORTHO05D004900 4.6e-17 91.7 91 61.5
Aa31LG8G7790 Aethionema arabicum HOM05D001245 ORTHO05D004900 6.0e-17 91.3 107 54.2
MSTRG.21365 Avicennia marina HOM05D001245 ORTHO05D004900 6.0e-17 91.3 104 51.9
AL3G35020 Arabidopsis lyrata HOM05D001245 ORTHO05D004900 1.0e-16 90.5 108 50.9
A01p33780 Brassica napus HOM05D001245 ORTHO05D004900 1.0e-16 90.5 101 56.4
A05p27650 Brassica napus HOM05D001245 ORTHO05D004900 1.0e-16 90.5 123 48.8
BraA05t21658Z Brassica rapa HOM05D001245 ORTHO05D004900 1.0e-16 90.5 123 48.8
Zm00001eb140570 Zea mays HOM05D001245 ORTHO05D004900 1.0e-16 90.5 91 58.2
C01p43200 Brassica napus HOM05D001245 ORTHO05D004900 1.3e-16 90.1 101 56.4
BolC3t17428H Brassica oleracea HOM05D001245 ORTHO05D004900 1.3e-16 90.1 142 48.6
BraA01t03489Z Brassica rapa HOM05D001245 ORTHO05D004900 1.3e-16 90.1 101 56.4
CANSAT54G0430 Cannabis sativa HOM05D001245 ORTHO05D004900 1.3e-16 90.1 106 52.8
BolC1t04266H Brassica oleracea HOM05D001245 ORTHO05D004900 1.8e-16 89.7 101 56.4
SHI29795 Sapria himalayana HOM05D001245 ORTHO05D004900 1.8e-16 89.7 102 54.9
MSTRG.12463 Avicennia marina HOM05D001245 ORTHO05D004900 2.3e-16 89.4 100 53.0
BcaB06g26174 Brassica carinata HOM05D001245 ORTHO05D004900 3.0e-16 89.0 123 48.0
Nitab4.5_0001747g0010 Nicotiana tabacum HOM05D001245 ORTHO05D004900 3.0e-16 89.0 73 64.4
Nitab4.5_0009763g0010 Nicotiana tabacum HOM05D001245 ORTHO05D004900 3.0e-16 89.0 73 64.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 6.7e-16 87.8 137 48.9
BcaC09g49046 Brassica carinata HOM05D001245 ORTHO05D004900 8.7e-16 87.4 101 55.4
BcaC05g28218 Brassica carinata HOM05D001245 ORTHO05D004900 1.1e-15 87.0 123 50.4
C05p43020 Brassica napus HOM05D001245 ORTHO05D004900 1.1e-15 87.0 123 50.4
BolC5t33033H Brassica oleracea HOM05D001245 ORTHO05D004900 1.1e-15 87.0 123 50.4
Sabra16G0156300 Salix brachista HOM05D001245 ORTHO05D004900 1.9e-15 86.3 103 50.5
Thhalv10009421m.g Eutrema salsugineum HOM05D001245 ORTHO05D004900 2.5e-15 85.9 105 52.4
AUR62000145 Chenopodium quinoa HOM05D001245 ORTHO05D004900 3.3e-15 85.5 92 55.4
Zm00001eb362660 Zea mays HOM05D001245 ORTHO05D004900 3.3e-15 85.5 93 54.8
BcaB04g20614 Brassica carinata HOM05D001245 ORTHO05D004900 4.3e-15 85.1 122 50.0
C03p51430 Brassica napus HOM05D001245 ORTHO05D004900 4.3e-15 85.1 139 46.8
BraA03t13355Z Brassica rapa HOM05D001245 ORTHO05D004900 4.3e-15 85.1 107 57.0
Duzib168G0839 Durio zibethinus HOM05D001245 ORTHO05D004900 4.3e-15 85.1 65 72.3
MD11G1190400 Malus domestica HOM05D001245 ORTHO05D004900 7.4e-15 84.3 137 43.8
CARHR096910 Cardamine hirsuta HOM05D001245 ORTHO05D004900 9.6e-15 84.0 110 52.7
Carub.0003s2097 Capsella rubella HOM05D001245 ORTHO05D004900 2.1e-14 82.8 106 51.9
ATR0730G209 Amborella trichopoda HOM05D001245 ORTHO05D004900 4.8e-14 81.6 90 53.3
AUR62019326 Chenopodium quinoa HOM05D001245 ORTHO05D004900 8.2e-14 80.9 73 58.9
A03p42010 Brassica napus HOM05D001245 ORTHO05D004900 1.1e-13 80.5 104 55.8
CiPaw.13G156400 Carya illinoinensis HOM05D001245 ORTHO05D004900 2.4e-13 79.3 75 64.0
Migut.N02339 Erythranthe guttata HOM05D001245 ORTHO05D004900 6.9e-13 77.8 92 51.1
Os01g0957000 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004900 1.2e-12 77.0 128 43.0
Os05g0388400 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004900 2.0e-12 76.3 64 65.6
SEGI_37379 Sequoiadendron giganteum HOM05D001245 ORTHO05D004900 2.0e-12 76.3 110 47.3
Gohir.D09G109500 Gossypium hirsutum HOM05D001245 ORTHO05D004900 3.4e-12 75.5 106 47.2
CiPaw.13G157600 Carya illinoinensis HOM05D001245 ORTHO05D004900 7.6e-12 74.3 76 60.5
CiPaw.13G157300 Carya illinoinensis HOM05D001245 ORTHO05D004900 1.7e-11 73.2 76 60.5
Lsat_1_v5_gn_8_29581 Lactuca sativa HOM05D015688 ORTHO05D025746 1.9e-10 69.7 84 53.6
HanXRQChr14g0432931 Helianthus annuus HOM05D001245 ORTHO05D004900 3.2e-10 68.9 84 51.2
Pp3c25_12850 Physcomitrium patens HOM05D001245 ORTHO05D004900 3.9e-08 62.0 84 47.6
Lalb_Chr03g0024471 Lupinus albus HOM05D001245 ORTHO05D004900 8.7e-08 60.8 79 44.3
Pp3c6_3660 Physcomitrium patens HOM05D001245 ORTHO05D004900 5.7e-07 58.2 85 44.7
Mapoly0052s0071 Marchantia polymorpha HOM05D001245 ORTHO05D004900 9.7e-07 57.4 66 50.0
Ciclev10014881m.g Citrus clementina HOM05D001245 ORTHO05D004900 2.8e-06 55.8 39 79.5


User provided reference genes

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