Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 1.3e-48 196.1 95 100.0
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 2.0e-38 162.2 94 76.6
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.1e-36 156.4 96 74.0
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.9e-36 155.6 96 76.0
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 9.4e-36 153.3 95 73.7
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.8e-34 149.1 95 70.5
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 2.2e-32 142.1 94 66.0
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 1.2e-30 136.3 99 64.6
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 1.6e-30 136.0 98 62.2
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 2.0e-30 135.6 96 65.6
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 2.6e-30 135.2 96 67.7
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 4.5e-30 134.4 96 65.6
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 5.9e-30 134.0 96 63.5
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 7.7e-30 133.7 98 62.2
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.3e-29 132.9 96 64.6
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 1.7e-29 132.5 97 64.9
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 2.9e-29 131.7 98 62.2
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 3.8e-29 131.3 98 62.2
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 6.5e-29 130.6 100 61.0
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 6.5e-29 130.6 98 62.2
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 8.5e-29 130.2 94 63.8
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 8.5e-29 130.2 98 59.2
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 1.5e-28 129.4 100 59.0
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.9e-28 129.0 98 60.2
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 3.2e-28 128.3 98 59.2
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 3.2e-28 128.3 98 60.2
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 4.2e-28 127.9 97 60.8
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 5.5e-28 127.5 98 60.2
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 9.4e-28 126.7 96 61.5
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 9.4e-28 126.7 99 62.6
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.2e-27 126.3 98 59.2
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.6e-27 125.9 98 59.2
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.6e-27 125.9 84 70.2
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 2.7e-27 125.2 96 63.5
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 2.7e-27 125.2 96 58.3
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 3.6e-27 124.8 93 62.4
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 4.7e-27 124.4 97 60.8
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 8.0e-27 123.6 98 58.2
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 8.0e-27 123.6 98 56.1
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 1.4e-26 122.9 93 61.3
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 1.8e-26 122.5 95 57.9
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.8e-26 122.5 97 57.7
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.8e-26 122.5 99 57.6
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.3e-26 122.1 98 58.2
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.3e-26 122.1 98 58.2
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 2.3e-26 122.1 93 60.2
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 3.0e-26 121.7 95 57.9
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 3.0e-26 121.7 96 58.3
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 4.0e-26 121.3 99 56.6
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 5.2e-26 120.9 96 58.3
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 2.0e-25 119.0 96 57.3
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 4.4e-25 117.9 97 55.7
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 7.5e-25 117.1 92 59.8
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 9.7e-25 116.7 96 54.2
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.3e-24 116.3 96 58.3
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 1.7e-24 115.9 96 55.2
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 2.2e-24 115.5 96 58.3
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 2.8e-24 115.2 83 63.9
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 2.8e-24 115.2 96 55.2
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 2.8e-24 115.2 95 54.7
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 3.7e-24 114.8 84 61.9
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 6.3e-24 114.0 96 57.3
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 1.1e-23 113.2 84 61.9
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 1.4e-23 112.8 98 54.1
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.4e-23 112.8 96 56.2
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.4e-23 112.8 96 56.2
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 1.8e-23 112.5 97 55.7
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 2.4e-23 112.1 86 60.5
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 4.1e-23 111.3 96 55.2
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 4.1e-23 111.3 96 55.2
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 5.3e-23 110.9 86 61.6
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 5.3e-23 110.9 95 56.8
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 7.0e-23 110.5 84 61.9
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 7.0e-23 110.5 84 61.9
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 7.0e-23 110.5 96 55.2
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 9.1e-23 110.2 84 61.9
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 9.1e-23 110.2 96 54.2
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 1.2e-22 109.8 83 60.2
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 2.7e-22 108.6 84 60.7
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 3.5e-22 108.2 97 53.6
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 3.5e-22 108.2 85 58.8
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 4.5e-22 107.8 84 59.5
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 5.9e-22 107.5 93 53.8
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 7.7e-22 107.1 96 51.0
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 1.3e-21 106.3 80 58.8
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.7e-21 105.9 84 59.5
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 5.0e-21 104.4 86 57.0
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 5.0e-21 104.4 92 55.4
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 8.5e-21 103.6 97 50.5
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.5e-20 102.8 86 54.7
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 1.5e-20 102.8 94 52.1
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.9e-20 102.4 86 54.7
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 7.2e-20 100.5 86 55.8
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 2.1e-19 99.0 86 51.2
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 3.6e-19 98.2 132 42.4
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 3.0e-18 95.1 99 47.5
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 3.0e-18 95.1 97 49.5
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 6.8e-18 94.0 84 52.4
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 8.8e-18 93.6 100 46.0
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 8.8e-18 93.6 101 45.5
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 1.5e-17 92.8 102 46.1
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 2.6e-17 92.0 99 45.5
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.6e-17 92.0 86 51.2
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 2.6e-17 92.0 86 50.0
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 3.4e-17 91.7 104 43.3
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 4.4e-17 91.3 105 43.8
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 5.7e-17 90.9 104 44.2
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 7.5e-17 90.5 83 51.8
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 7.5e-17 90.5 105 43.8
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 9.8e-17 90.1 102 44.1
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 9.8e-17 90.1 107 43.0
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 1.7e-16 89.4 109 42.2
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 1.7e-16 89.4 73 58.9
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 1.7e-16 89.4 84 51.2
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 2.8e-16 88.6 100 44.0
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 4.8e-16 87.8 102 44.1
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 8.3e-16 87.0 65 61.5
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 8.3e-16 87.0 73 54.8
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 1.1e-15 86.7 101 43.6
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 1.8e-15 85.9 58 63.8
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 7.7e-14 80.5 77 48.1
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 3.8e-13 78.2 53 62.3
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 2.5e-12 75.5 53 60.4
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 1.6e-11 72.8 57 49.1
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 2.8e-11 72.0 81 45.7
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 8.0e-11 70.5 87 40.2
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 8.0e-11 70.5 87 40.2
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 8.0e-11 70.5 57 56.1
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 2.0e-09 65.9 73 43.8
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 5.4e-07 57.8 49 46.9
Zm00001eb318190 Zea mays HOM05D000360 ORTHO05D006835 5.4e-07 57.8 41 58.5
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 5.9e-06 54.3 76 36.8
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 5.9e-06 54.3 76 36.8


User provided reference genes

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