Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.6e-104 382.1 198 100.0
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.8e-66 255.8 189 73.5
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.7e-66 255.4 199 72.4
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.0e-64 249.6 204 70.6
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 4.9e-63 245.0 207 69.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 2.5e-62 242.7 162 76.5
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.5e-62 242.7 204 68.6
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.1e-62 241.1 195 69.2
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 7.1e-62 241.1 195 66.2
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 7.1e-62 241.1 166 74.7
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.2e-61 240.4 157 78.3
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.1e-61 239.6 199 67.3
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 2.1e-61 239.6 204 68.1
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.5e-61 238.8 204 67.6
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 4.6e-61 238.4 157 77.1
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 4.6e-61 238.4 210 67.1
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 4.6e-61 238.4 205 65.4
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 6.0e-61 238.0 201 63.7
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.0e-60 237.3 155 78.7
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.0e-60 237.3 209 66.0
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.3e-60 236.9 209 65.6
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.3e-60 236.1 153 77.8
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 3.9e-60 235.3 154 76.6
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 5.1e-60 235.0 167 70.1
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 5.1e-60 235.0 204 65.2
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 6.7e-60 234.6 155 76.8
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 8.7e-60 234.2 196 65.8
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.7e-60 234.2 200 65.5
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.9e-59 233.0 186 65.6
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.9e-59 233.0 185 67.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.3e-59 232.3 215 64.2
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.3e-59 231.9 208 64.4
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 4.3e-59 231.9 206 65.5
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 4.3e-59 231.9 202 63.4
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 7.4e-59 231.1 199 67.3
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 7.4e-59 231.1 153 76.5
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 9.6e-59 230.7 168 71.4
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.3e-58 230.3 162 71.0
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.3e-58 230.3 188 68.1
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.6e-58 229.9 212 62.3
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.1e-58 229.6 184 66.8
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 2.1e-58 229.6 155 75.5
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 2.8e-58 229.2 199 64.3
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 3.7e-58 228.8 203 65.5
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 4.8e-58 228.4 216 61.1
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 4.8e-58 228.4 150 76.0
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 4.8e-58 228.4 150 76.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 4.8e-58 228.4 150 76.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 4.8e-58 228.4 150 76.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 4.8e-58 228.4 150 76.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 4.8e-58 228.4 150 76.0
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 4.8e-58 228.4 155 75.5
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 8.2e-58 227.6 150 76.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 8.2e-58 227.6 150 76.0
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 8.2e-58 227.6 184 65.2
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 8.2e-58 227.6 213 63.4
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 8.2e-58 227.6 199 63.8
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 8.2e-58 227.6 199 63.8
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-57 227.3 200 62.5
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.1e-57 227.3 202 63.4
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.1e-57 227.3 205 61.5
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.4e-57 226.9 154 76.0
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.4e-57 226.9 159 71.1
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.4e-57 226.9 198 66.2
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.4e-57 226.1 214 60.3
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 2.4e-57 226.1 172 68.0
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.1e-57 225.7 212 60.4
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 4.1e-57 225.3 203 62.1
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 6.9e-57 224.6 171 71.3
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 6.9e-57 224.6 197 62.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 6.9e-57 224.6 198 65.2
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 6.9e-57 224.6 207 60.4
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 1.2e-56 223.8 212 60.8
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.5e-56 223.4 197 63.5
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.0e-56 223.0 206 60.2
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.0e-56 223.0 206 60.2
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.0e-56 223.0 206 60.2
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.0e-56 223.0 155 72.3
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.6e-56 222.6 184 65.2
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 3.4e-56 222.2 212 61.3
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 5.9e-56 221.5 155 73.5
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 5.9e-56 221.5 163 69.3
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 7.6e-56 221.1 206 60.7
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 7.6e-56 221.1 204 61.8
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.0e-55 220.7 204 61.8
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.0e-55 220.7 205 61.0
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.0e-55 220.7 201 62.2
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.3e-55 220.3 155 72.9
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 1.3e-55 220.3 209 60.3
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-55 220.3 204 61.3
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.7e-55 219.9 210 58.1
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.2e-55 219.5 191 64.4
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.9e-55 219.2 204 61.3
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.8e-55 218.8 165 68.5
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.5e-55 218.0 184 66.3
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.5e-55 218.0 184 66.3
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 8.4e-55 217.6 121 86.8
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-54 216.5 198 63.1
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 2.5e-54 216.1 212 60.8
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 2.3e-52 209.5 207 57.0
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.5e-51 206.8 170 63.5
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.3e-51 205.7 153 70.6
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 4.3e-51 205.3 138 73.2
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 7.4e-51 204.5 174 63.8
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.6e-50 203.4 199 57.3
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 4.8e-50 201.8 244 49.6
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.4e-49 199.5 218 57.3
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 5.3e-49 198.4 157 65.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.5e-48 196.8 191 58.1
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.5e-48 196.8 201 57.2
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 4.5e-48 195.3 233 52.8
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 7.7e-48 194.5 196 58.2
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.0e-47 194.1 159 62.9
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 9.4e-46 187.6 202 52.5
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.2e-45 187.2 299 43.5
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.2e-45 187.2 210 53.8
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.6e-45 186.8 119 72.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 2.7e-45 186.0 208 55.3
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 7.9e-45 184.5 125 72.0
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.8e-44 183.3 204 52.5
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.8e-44 183.3 204 52.5
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 2.3e-44 183.0 102 89.2
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.3e-44 183.0 121 74.4
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 3.0e-44 182.6 154 64.3
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.5e-43 179.5 171 56.7
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.2e-42 176.4 164 56.7
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.9e-38 163.3 152 61.8
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.8e-36 156.8 153 52.3
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 3.9e-36 155.6 93 77.4
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.3e-35 152.5 190 43.7
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.4e-35 152.1 185 46.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.1e-33 147.5 81 88.9
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.4e-33 147.1 172 45.9
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 9.1e-33 144.4 106 59.4
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.2e-32 144.1 154 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.3e-31 140.6 117 54.7
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 7.2e-30 134.8 214 44.4
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.7e-26 122.5 67 86.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.7e-26 122.5 67 86.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 8.2e-26 121.3 80 75.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 9.8e-19 97.8 125 51.2
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 4.2e-14 82.4 54 72.2
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 3.6e-13 79.3 50 72.0
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 2.0e-11 73.6 164 39.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.8e-07 59.3 156 32.1
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 3.3e-06 56.2 38 68.4


User provided reference genes

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