Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0124 Ceratophyllum demersum HOM05D004982 ORTHO05D002186 4.6e-88 327.8 158 100.0
CDE05G0636 Ceratophyllum demersum HOM05D004982 ORTHO05D002186 7.7e-59 230.7 227 58.6
Nn1g07475 Nelumbo nucifera HOM05D004982 ORTHO05D002186 5.0e-18 95.1 96 52.1
Manes.12G065100 Manihot esculenta HOM05D004982 ORTHO05D002186 2.8e-16 89.4 95 52.6
Nn1g03222 Nelumbo nucifera HOM05D004982 ORTHO05D002186 8.1e-16 87.8 97 52.6
TAR629G0570 Trochodendron aralioides HOM05D004982 ORTHO05D002186 1.4e-15 87.0 95 51.6
Aqoxy4G02235 Aquilegia oxysepala HOM05D004982 ORTHO05D002186 1.2e-14 84.0 93 48.4
Thecc.01G192300 Theobroma cacao HOM05D004982 ORTHO05D002186 1.5e-14 83.6 97 47.4
CSS0012122 Camellia sinensis var. sinensis HOM05D004982 ORTHO05D002186 2.6e-14 82.8 96 50.0
CSS0024183 Camellia sinensis var. sinensis HOM05D004982 ORTHO05D002186 2.6e-14 82.8 96 50.0
Gohir.A07G191100 Gossypium hirsutum HOM05D004982 ORTHO05D002186 3.4e-14 82.4 96 47.9
Duzib133G0730 Durio zibethinus HOM05D004982 ORTHO05D002186 4.4e-14 82.0 104 47.1
TWI36G1761 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 4.4e-14 82.0 94 55.3
Sabra14G0126300 Salix brachista HOM05D004982 ORTHO05D002186 5.8e-14 81.6 102 46.1
Gohir.D07G197500 Gossypium hirsutum HOM05D004982 ORTHO05D002186 7.5e-14 81.3 96 47.9
Gorai.001G221200 Gossypium raimondii HOM05D004982 ORTHO05D002186 7.5e-14 81.3 96 47.9
Potri.014G165700 Populus trichocarpa HOM05D004982 ORTHO05D002186 7.5e-14 81.3 95 51.6
Duzib138G0769 Durio zibethinus HOM05D004982 ORTHO05D002186 9.8e-14 80.9 100 43.0
Gohir.A07G191200 Gossypium hirsutum HOM05D004982 ORTHO05D002186 9.8e-14 80.9 96 46.9
Sed0002771 Sechium edule HOM05D004982 ORTHO05D002186 9.8e-14 80.9 93 50.5
TAR627G1196 Trochodendron aralioides HOM05D004982 ORTHO05D002186 1.3e-13 80.5 100 51.0
vmacro12098 Vaccinium macrocarpon HOM05D004982 ORTHO05D002186 1.3e-13 80.5 94 47.9
Lsat_1_v5_gn_9_104061 Lactuca sativa HOM05D004982 ORTHO05D002186 2.2e-13 79.7 95 48.4
Gorai.001G221300 Gossypium raimondii HOM05D004982 ORTHO05D002186 2.9e-13 79.3 96 46.9
Gohir.D07G197600 Gossypium hirsutum HOM05D004982 ORTHO05D002186 3.7e-13 79.0 96 46.9
HanXRQChr12g0373981 Helianthus annuus HOM05D004982 ORTHO05D002186 3.7e-13 79.0 95 50.5
Glyma.02G304900 Glycine max HOM05D004982 ORTHO05D002186 4.9e-13 78.6 93 48.4
Mapoly0043s0052 Marchantia polymorpha HOM05D004371 ORTHO05D002186 4.9e-13 78.6 74 48.6
Phvul.008G284300 Phaseolus vulgaris HOM05D004982 ORTHO05D002186 4.9e-13 78.6 96 45.8
CANSAT64G0146 Cannabis sativa HOM05D004982 ORTHO05D002186 6.4e-13 78.2 93 52.7
Lj8P134T70 Lonicera japonica HOM05D004982 ORTHO05D002186 6.4e-13 78.2 95 51.6
Cc05_g02080 Coffea canephora HOM05D004982 ORTHO05D002186 8.3e-13 77.8 113 46.9
Cc05_g02090 Coffea canephora HOM05D004982 ORTHO05D002186 8.3e-13 77.8 113 46.9
Peaxi162Scf00776g00012 Petunia axillaris HOM05D004982 ORTHO05D002186 8.3e-13 77.8 102 46.1
Rhsim06G0174900 Rhododendron simsii HOM05D004982 ORTHO05D002186 8.3e-13 77.8 96 45.8
Sed0018645 Sechium edule HOM05D004982 ORTHO05D002186 8.3e-13 77.8 102 48.0
Glyma.14G009000 Glycine max HOM05D004982 ORTHO05D002186 1.4e-12 77.0 102 44.1
PGSC0003DMG400018830 Solanum tuberosum HOM05D004982 ORTHO05D002186 1.4e-12 77.0 98 46.9
VMungo0647G1787 Vigna mungo HOM05D004982 ORTHO05D002186 1.4e-12 77.0 93 46.2
Ca_06447_v3 Cicer arietinum L. HOM05D004982 ORTHO05D002186 1.9e-12 76.6 93 46.2
TPR.G1238 Trifolium pratense HOM05D004982 ORTHO05D002186 2.4e-12 76.3 94 45.7
Rhsim01G0200200 Rhododendron simsii HOM05D004982 ORTHO05D002186 3.2e-12 75.9 96 45.8
arahy.Tifrunner.gnm1.ann1.IU3Y9Z Arachis hypogaea HOM05D004982 ORTHO05D002186 4.1e-12 75.5 106 50.0
arahy.Tifrunner.gnm1.ann1.M8NM2L Arachis hypogaea HOM05D004982 ORTHO05D002186 5.4e-12 75.1 106 50.0
ClCG02G009320 Citrullus lanatus HOM05D004982 ORTHO05D002186 7.1e-12 74.7 102 48.0
Duzib211G0315 Durio zibethinus HOM05D004982 ORTHO05D002186 7.1e-12 74.7 100 44.0
FAN02G0651 Fragaria x ananassa HOM05D004982 ORTHO05D002186 7.1e-12 74.7 102 47.1
Psat2g004800 Pisum sativum HOM05D004982 ORTHO05D002186 7.1e-12 74.7 93 41.9
Actinidia07875 Actinidia chinensis HOM05D004982 ORTHO05D002186 9.2e-12 74.3 99 47.5
Actinidia27650 Actinidia chinensis HOM05D004982 ORTHO05D002186 9.2e-12 74.3 99 47.5
Oeu029969.1 Olea europaea HOM05D004982 ORTHO05D002186 9.2e-12 74.3 99 46.5
FvH4_6g40870 Fragaria vesca HOM05D004982 ORTHO05D002186 1.2e-11 73.9 93 50.5
FAN05G3922 Fragaria x ananassa HOM05D004982 ORTHO05D002186 1.2e-11 73.9 93 50.5
FAN09G2641 Fragaria x ananassa HOM05D004982 ORTHO05D002186 1.2e-11 73.9 93 50.5
FAN14G0821 Fragaria x ananassa HOM05D004982 ORTHO05D002186 1.2e-11 73.9 93 50.5
MD17G1114700 Malus domestica HOM05D004982 ORTHO05D002186 1.2e-11 73.9 106 46.2
RcHm_v2.0_Chr2g0156431 Rosa chinensis HOM05D004982 ORTHO05D002186 1.2e-11 73.9 93 49.5
Solyc05g040040.1 Solanum lycopersicum HOM05D004982 ORTHO05D002186 1.2e-11 73.9 93 47.3
Sopen05g025150 Solanum pennellii HOM05D004982 ORTHO05D002186 1.2e-11 73.9 93 47.3
Lsat_1_v5_gn_5_121881 Lactuca sativa HOM05D004982 ORTHO05D002186 1.6e-11 73.6 99 49.5
PGR042G3175 Punica granatum HOM05D004982 ORTHO05D002186 1.6e-11 73.6 97 47.4
Sopen07g024130 Solanum pennellii HOM05D004982 ORTHO05D002186 1.6e-11 73.6 105 45.7
TWI75G0082 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 1.6e-11 73.6 87 56.3
SMO271G0134 Selaginella moellendorffii HOM05D004371 ORTHO05D002186 2.1e-11 73.2 85 47.1
Prupe.3G200200 Prunus persica HOM05D004982 ORTHO05D002186 2.7e-11 72.8 95 48.4
CsaV3_6G009570 Cucumis sativus L. HOM05D004982 ORTHO05D002186 3.5e-11 72.4 93 49.5
SEGI_31117 Sequoiadendron giganteum HOM05D004371 ORTHO05D002186 3.5e-11 72.4 96 40.6
TWI23G0673 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 3.5e-11 72.4 87 52.9
MELO3C025964.2 Cucumis melo HOM05D004982 ORTHO05D002186 4.6e-11 72.0 93 49.5
Nitab4.5_0002987g0020 Nicotiana tabacum HOM05D004982 ORTHO05D002186 4.6e-11 72.0 103 44.7
DCAR_019701 Daucus carota HOM05D004982 ORTHO05D002186 6.0e-11 71.6 97 42.3
Nitab4.5_0001166g0010 Nicotiana tabacum HOM05D004982 ORTHO05D002186 6.0e-11 71.6 103 46.6
Cfa014236 Carpinus fangiana HOM05D004982 ORTHO05D002186 7.8e-11 71.2 94 48.9
COL.COLO4_33355 Corchorus olitorius HOM05D004982 ORTHO05D002186 7.8e-11 71.2 106 41.5
Haze_12651 Corylus avellana HOM05D004982 ORTHO05D002186 7.8e-11 71.2 94 48.9
Haze_12653 Corylus avellana HOM05D004982 ORTHO05D002186 7.8e-11 71.2 94 48.9
Cpa.g.sc211.16 Carica papaya HOM05D004982 ORTHO05D002186 1.0e-10 70.9 101 42.6
PGSC0003DMG400006123 Solanum tuberosum HOM05D004982 ORTHO05D002186 1.0e-10 70.9 109 42.2
CiPaw.03G280400 Carya illinoinensis HOM05D004982 ORTHO05D002186 1.3e-10 70.5 102 44.1
DCAR_021099 Daucus carota HOM05D004982 ORTHO05D002186 1.3e-10 70.5 90 44.4
Solyc07g047680.3 Solanum lycopersicum HOM05D004982 ORTHO05D002186 1.3e-10 70.5 112 42.9
TWI18G1163 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 1.3e-10 70.5 94 52.1
HanXRQChr03g0075171 Helianthus annuus HOM05D004982 ORTHO05D002186 1.7e-10 70.1 96 42.7
Lalb_Chr04g0247341 Lupinus albus HOM05D004982 ORTHO05D002186 1.7e-10 70.1 94 45.7
MD09G1123900 Malus domestica HOM05D004982 ORTHO05D002186 1.7e-10 70.1 97 45.4
Medtr5g097150 Medicago truncatula HOM05D004982 ORTHO05D002186 2.3e-10 69.7 93 43.0
QL08p028387 Quercus lobata HOM05D004982 ORTHO05D002186 2.3e-10 69.7 92 50.0
Actinidia09785 Actinidia chinensis HOM05D004982 ORTHO05D002186 3.0e-10 69.3 69 53.6
Ciclev10016961m.g Citrus clementina HOM05D004982 ORTHO05D002186 3.0e-10 69.3 101 45.5
Dinv21279 Davidia involucrata HOM05D004982 ORTHO05D002186 3.0e-10 69.3 92 46.7
CiPaw.04G196500 Carya illinoinensis HOM05D004982 ORTHO05D002186 3.9e-10 68.9 95 50.5
Eucgr.A01039 Eucalyptus grandis HOM05D004982 ORTHO05D002186 3.9e-10 68.9 100 43.0
Hma1.2p1_0545F.1_g176050 Hydrangea macrophylla HOM05D004982 ORTHO05D002186 5.1e-10 68.6 70 51.4
SalBow7G1604 Salvia bowleyana HOM05D004982 ORTHO05D002186 8.6e-10 67.8 105 40.0
LjContig00081g0025622 Lotus japonicus HOM05D004982 ORTHO05D002186 1.5e-09 67.0 97 42.3
BcaB04g19555 Brassica carinata HOM05D004982 ORTHO05D002186 1.9e-09 66.6 93 44.1
BcaB04g19556 Brassica carinata HOM05D004982 ORTHO05D002186 1.9e-09 66.6 93 44.1
BcaC04g23789 Brassica carinata HOM05D004982 ORTHO05D002186 1.9e-09 66.6 93 44.1
Peaxi162Scf00147g01916 Petunia axillaris HOM05D004982 ORTHO05D002186 1.9e-09 66.6 105 43.8
MSTRG.12246 Avicennia marina HOM05D004982 ORTHO05D002186 3.3e-09 65.9 68 51.5
Sed0011483 Sechium edule HOM05D004982 ORTHO05D002186 4.3e-09 65.5 102 39.2
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 5.6e-09 65.1 98 38.8
CAN.G1036.3 Capsicum annuum HOM05D004982 ORTHO05D002186 7.3e-09 64.7 71 53.5
A06p39340 Brassica napus HOM05D004982 ORTHO05D002186 9.5e-09 64.3 95 42.1
BraA06t26849Z Brassica rapa HOM05D004982 ORTHO05D002186 9.5e-09 64.3 95 42.1
Migut.M00043 Erythranthe guttata HOM05D004982 ORTHO05D002186 1.2e-08 63.9 104 38.5
SGA_v2.0_scaffold73G24499 Striga asiatica HOM05D004982 ORTHO05D002186 1.2e-08 63.9 98 42.9
AUR62029094 Chenopodium quinoa HOM05D004982 ORTHO05D002186 1.6e-08 63.5 102 40.2
HanXRQChr14g0458611 Helianthus annuus HOM05D004982 ORTHO05D002186 1.6e-08 63.5 90 41.1
EL10Ac9g22690 Beta vulgaris HOM05D004982 ORTHO05D002186 2.1e-08 63.2 100 41.0
C07p38930 Brassica napus HOM05D004982 ORTHO05D002186 4.7e-08 62.0 95 40.0
BolC7t44413H Brassica oleracea HOM05D004982 ORTHO05D002186 8.1e-08 61.2 95 40.0
AL8G20840 Arabidopsis lyrata HOM05D004982 ORTHO05D002186 1.4e-07 60.5 93 40.9
BcaC06g30821 Brassica carinata HOM05D004982 ORTHO05D002186 1.8e-07 60.1 93 40.9
Carub.0008s0774 Capsella rubella HOM05D004982 ORTHO05D002186 2.3e-07 59.7 93 41.9
Thhalv10005063m.g Eutrema salsugineum HOM05D004982 ORTHO05D002186 3.1e-07 59.3 93 41.9
CARHR184160 Cardamine hirsuta HOM05D004982 ORTHO05D002186 4.0e-07 58.9 93 41.9
Sp2g18570 Schrenkiella parvula HOM05D004982 ORTHO05D002186 4.0e-07 58.9 93 40.9
AT5G48170 Arabidopsis thaliana HOM05D004982 ORTHO05D002186 5.2e-07 58.5 93 41.9
BcaB07g30005 Brassica carinata HOM05D004982 ORTHO05D002186 5.2e-07 58.5 93 40.9
A02p37280 Brassica napus HOM05D004982 ORTHO05D002186 5.2e-07 58.5 93 40.9
C02p56310 Brassica napus HOM05D004982 ORTHO05D002186 5.2e-07 58.5 93 40.9
BolC2t11687H Brassica oleracea HOM05D004982 ORTHO05D002186 5.2e-07 58.5 93 40.9
BraA02t08714Z Brassica rapa HOM05D004982 ORTHO05D002186 5.2e-07 58.5 93 40.9
SEGI_33552 Sequoiadendron giganteum HOM05D004371 ORTHO05D002186 5.2e-07 58.5 99 35.4
BcaC03g17634 Brassica carinata HOM05D004982 ORTHO05D002186 6.8e-07 58.2 92 41.3
Gohir.D07G092300 Gossypium hirsutum HOM05D004982 ORTHO05D002186 6.8e-07 58.2 72 43.1
SEGI_08538 Sequoiadendron giganteum HOM05D004371 ORTHO05D002186 2.6e-06 56.2 95 36.8
BcaB04g19561 Brassica carinata HOM05D004982 ORTHO05D002186 4.4e-06 55.5 91 40.7
A09p04340 Brassica napus HOM05D004982 ORTHO05D002186 4.4e-06 55.5 91 40.7
C09p04650 Brassica napus HOM05D004982 ORTHO05D002186 4.4e-06 55.5 91 40.7
BolC9t53392H Brassica oleracea HOM05D004982 ORTHO05D002186 4.4e-06 55.5 91 40.7
BraA09t36071Z Brassica rapa HOM05D004982 ORTHO05D002186 4.4e-06 55.5 91 40.7
Gorai.001G098900 Gossypium raimondii HOM05D004982 ORTHO05D002186 4.4e-06 55.5 67 46.3
ATR0205G008 Amborella trichopoda HOM05D004371 ORTHO05D002186 5.8e-06 55.1 94 35.1
Oeu064360.1 Olea europaea HOM05D004982 ORTHO05D002186 5.8e-06 55.1 70 42.9
HPP92_021281 Vanilla planifolia HOM05D004982 ORTHO05D002186 5.8e-06 55.1 92 39.1


User provided reference genes

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