Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0117 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 3.7e-157 558.1 281 100.0
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 4.1e-95 352.1 249 76.3
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 2.2e-88 329.7 258 69.0
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 4.8e-88 328.6 258 67.1
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 8.2e-88 327.8 258 68.2
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 2.4e-87 326.2 258 67.1
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 7.0e-87 324.7 258 66.7
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 9.1e-87 324.3 258 67.8
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 1.6e-86 323.6 258 66.7
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 4.5e-86 322.0 253 66.4
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 5.9e-86 321.6 258 67.8
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 5.9e-86 321.6 258 67.8
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 5.9e-86 321.6 257 66.9
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 5.9e-86 321.6 257 67.3
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.3e-85 320.5 254 66.5
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 1.3e-85 320.5 253 67.2
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 1.3e-85 320.5 258 66.7
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 1.7e-85 320.1 258 66.3
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.7e-85 320.1 258 66.3
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 1.7e-85 320.1 258 65.5
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.2e-85 319.7 258 66.3
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 2.9e-85 319.3 258 66.7
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 2.9e-85 319.3 250 66.8
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 2.9e-85 319.3 258 66.7
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 3.8e-85 318.9 258 66.7
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 5.0e-85 318.5 256 66.0
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 5.0e-85 318.5 258 65.5
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 6.5e-85 318.2 258 66.3
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 8.5e-85 317.8 250 67.2
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 8.5e-85 317.8 250 67.2
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 8.5e-85 317.8 258 65.9
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 8.5e-85 317.8 258 65.5
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 1.1e-84 317.4 250 66.8
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 1.1e-84 317.4 250 66.0
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 1.5e-84 317.0 258 64.7
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.5e-84 317.0 256 66.0
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 1.5e-84 317.0 258 66.3
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 1.9e-84 316.6 249 66.3
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 2.5e-84 316.2 253 66.4
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 2.5e-84 316.2 258 66.3
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 3.2e-84 315.8 253 64.8
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 3.2e-84 315.8 250 66.4
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 3.2e-84 315.8 258 64.7
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 4.2e-84 315.5 255 66.3
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 4.2e-84 315.5 258 65.9
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 4.2e-84 315.5 250 66.0
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 4.2e-84 315.5 258 66.7
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 5.5e-84 315.1 258 64.0
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 7.2e-84 314.7 256 64.8
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 7.2e-84 314.7 250 65.2
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 7.2e-84 314.7 250 65.2
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 9.4e-84 314.3 256 64.5
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 9.4e-84 314.3 256 64.5
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.2e-83 313.9 261 63.6
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 1.6e-83 313.5 261 64.4
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.6e-83 313.5 250 65.2
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.6e-83 313.5 253 66.0
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 1.6e-83 313.5 253 66.0
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 2.1e-83 313.2 261 63.6
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 2.7e-83 312.8 256 64.1
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 2.7e-83 312.8 256 64.1
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 2.7e-83 312.8 256 64.1
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 2.7e-83 312.8 258 64.3
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 2.7e-83 312.8 258 64.0
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 2.7e-83 312.8 258 65.1
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 2.7e-83 312.8 261 64.4
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 2.7e-83 312.8 260 64.2
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 2.7e-83 312.8 249 65.9
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 3.6e-83 312.4 256 64.5
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 3.6e-83 312.4 256 64.1
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 3.6e-83 312.4 256 64.1
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 3.6e-83 312.4 256 64.1
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 3.6e-83 312.4 250 65.6
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 4.7e-83 312.0 256 64.1
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 6.1e-83 311.6 258 65.5
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 8.0e-83 311.2 256 63.7
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 8.0e-83 311.2 250 65.2
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 8.0e-83 311.2 250 65.2
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 1.0e-82 310.8 184 79.9
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 1.0e-82 310.8 258 64.7
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 1.0e-82 310.8 257 64.6
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.0e-82 310.8 258 64.3
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 1.0e-82 310.8 258 65.5
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 1.0e-82 310.8 261 63.6
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 1.4e-82 310.5 256 63.7
TAR365G0691 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.4e-82 310.5 258 66.3
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 1.8e-82 310.1 256 63.3
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.8e-82 310.1 256 64.8
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 2.3e-82 309.7 250 65.2
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.3e-82 309.7 273 61.5
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.3e-82 309.7 273 61.5
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 4.0e-82 308.9 256 64.8
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 6.7e-82 308.1 258 62.8
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 8.8e-82 307.8 256 62.9
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 8.8e-82 307.8 256 62.9
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 8.8e-82 307.8 258 64.0
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 1.2e-81 307.4 270 61.5
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 2.0e-81 306.6 265 61.9
CARHR242660 Cardamine hirsuta HOM05D003442 ORTHO05D004005 2.6e-81 306.2 221 69.7
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 2.6e-81 306.2 251 64.9
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 2.6e-81 306.2 250 64.0
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 3.3e-81 305.8 256 62.5
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 3.3e-81 305.8 250 64.0
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 3.3e-81 305.8 256 63.7
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 5.7e-81 305.1 249 63.1
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 7.5e-81 304.7 256 62.1
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 9.7e-81 304.3 258 64.7
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 9.7e-81 304.3 258 64.3
AL7G17190 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.7e-80 303.5 184 78.8
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 2.2e-80 303.1 250 63.2
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.2e-80 303.1 226 67.3
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 2.2e-80 303.1 250 64.0
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.8e-80 302.8 253 61.3
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 3.7e-80 302.4 261 62.5
Oeu001224.1 Olea europaea HOM05D003442 ORTHO05D004005 8.2e-80 301.2 258 62.8
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 1.1e-79 300.8 226 65.9
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 1.1e-79 300.8 258 63.2
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 4.1e-79 298.9 277 58.8
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 5.3e-79 298.5 270 59.3
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 9.1e-79 297.7 253 63.2
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 9.1e-79 297.7 253 62.1
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 1.2e-78 297.4 249 60.2
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 2.0e-78 296.6 258 62.4
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 3.5e-78 295.8 260 61.2
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 4.5e-78 295.4 221 67.9
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 4.5e-78 295.4 221 67.9
Phvul.003G250932 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 4.5e-78 295.4 171 83.0
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 2.2e-77 293.1 249 63.5
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 8.5e-77 291.2 253 62.1
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 1.9e-76 290.0 299 55.2
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 1.4e-74 283.9 247 60.7
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 1.4e-74 283.9 197 66.0
arahy.Tifrunner.gnm1.ann1.I4HYIQ Arachis hypogaea HOM05D003442 ORTHO05D004005 1.8e-74 283.5 162 84.0
MSTRG.344 Avicennia marina HOM05D003442 ORTHO05D004005 1.8e-74 283.5 162 84.0
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 4.0e-74 282.3 258 60.5
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 5.2e-74 282.0 232 65.9
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 3.4e-73 279.3 266 58.3
Ciclev10032936m.g Citrus clementina HOM05D003442 ORTHO05D004005 2.8e-72 276.2 162 80.2
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 1.6e-70 270.4 240 59.6
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 1.6e-70 270.4 240 59.6
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 7.2e-68 261.5 252 52.8
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 2.1e-67 260.0 254 53.1
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 4.7e-67 258.8 234 58.5
Actinidia07921 Actinidia chinensis HOM05D003442 ORTHO05D004005 6.8e-66 255.0 144 84.0
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 3.4e-65 252.7 252 50.8
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 4.9e-64 248.8 258 55.8
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.8e-63 246.9 258 55.0
ATR0794G121 Amborella trichopoda HOM05D003442 ORTHO05D004005 2.0e-62 243.4 141 83.7
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 5.9e-62 241.9 190 58.9
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.9e-61 239.6 250 54.0
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 1.9e-60 236.9 195 61.5
CANSAT35G0263 Cannabis sativa HOM05D003442 ORTHO05D004005 1.2e-59 234.2 247 51.0
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 1.4e-58 230.7 195 60.0
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 2.6e-57 226.5 132 81.1
CDE04G3472 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 9.5e-52 208.0 102 99.0
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 4.0e-50 202.6 155 63.9
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 3.7e-48 196.1 192 49.5
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 7.8e-46 188.3 254 37.8
Sed0024694 Sechium edule HOM05D003442 ORTHO05D004005 8.1e-43 178.3 159 62.3
Lsat_1_v5_gn_2_1040 Lactuca sativa HOM05D003442 ORTHO05D004005 9.2e-39 164.9 141 63.1
MD01G1238200 Malus domestica HOM05D003442 ORTHO05D004005 3.5e-38 162.9 184 50.0
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 7.3e-36 155.2 175 42.9
SHI02587 Sapria himalayana HOM05D003442 ORTHO05D004005 2.8e-35 153.3 131 56.5
vmacro00759 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 3.1e-34 149.8 90 76.7
Ciclev10033985m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.4e-31 141.0 82 81.7
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 5.4e-31 139.0 171 43.9
PGSC0003DMG402011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 2.1e-30 137.1 82 81.7
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 6.0e-30 135.6 149 45.0
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 2.1e-27 127.1 159 49.7
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 1.1e-18 98.2 115 53.0
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 3.1e-18 96.7 82 53.7
SHI02588 Sapria himalayana HOM05D000002 ORTHO05D000001 8.1e-11 72.0 82 51.2
Rhsim04G0133100 Rhododendron simsii HOM05D003442 ORTHO05D339879 4.5e-09 66.2 45 66.7


User provided reference genes

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