Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.4e-181 639.4 306 100.0
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 6.7e-144 514.2 276 89.5
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 4.0e-120 435.3 267 73.4
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 5.2e-120 434.9 269 74.0
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 2.0e-116 422.9 267 72.7
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 2.7e-116 422.5 270 69.6
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 7.8e-116 421.0 267 72.3
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 1.1e-114 417.2 273 69.2
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 1.1e-114 417.2 267 71.2
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.9e-114 416.4 269 69.9
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.5e-114 416.0 269 69.9
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 2.5e-114 416.0 267 70.0
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 3.3e-114 415.6 269 69.9
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 7.3e-114 414.5 270 71.9
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 7.3e-114 414.5 270 71.9
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 9.5e-114 414.1 267 70.8
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 1.6e-113 413.3 271 68.3
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 1.6e-113 413.3 267 71.2
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 2.8e-113 412.5 274 68.2
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 2.8e-113 412.5 267 70.0
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 8.0e-113 411.0 269 69.1
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 2.3e-112 409.5 268 70.9
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 3.1e-112 409.1 267 69.3
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 4.0e-112 408.7 267 69.7
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 4.0e-112 408.7 269 69.1
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 5.2e-112 408.3 268 70.9
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 6.8e-112 407.9 272 71.0
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 6.8e-112 407.9 272 71.0
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 8.9e-112 407.5 269 68.8
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 8.9e-112 407.5 267 68.2
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.0e-111 406.4 269 68.8
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 2.0e-111 406.4 268 70.9
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 2.0e-111 406.4 267 68.5
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.6e-111 406.0 271 69.4
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.3e-110 403.7 267 67.8
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 1.3e-110 403.7 268 69.8
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 2.9e-110 402.5 268 68.7
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 3.7e-110 402.1 267 69.7
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.1e-109 400.6 271 68.3
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 1.1e-109 400.6 270 67.8
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 3.2e-109 399.1 267 68.5
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 5.4e-109 398.3 280 66.8
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 5.4e-109 398.3 280 66.8
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 5.4e-109 398.3 268 67.9
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 5.4e-109 398.3 267 69.7
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 7.0e-109 397.9 268 67.9
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 7.0e-109 397.9 269 68.8
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 7.0e-109 397.9 269 68.8
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 9.2e-109 397.5 267 66.3
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.2e-108 397.1 268 67.2
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 4.6e-108 395.2 268 67.5
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 4.6e-108 395.2 267 69.3
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 4.6e-108 395.2 268 66.8
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 6.0e-108 394.8 268 68.3
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.7e-107 393.3 264 68.2
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 2.3e-107 392.9 269 69.5
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 2.3e-107 392.9 268 67.2
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 3.0e-107 392.5 267 67.8
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 5.1e-107 391.7 277 64.6
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 6.6e-107 391.3 268 67.2
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 6.6e-107 391.3 268 67.2
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 6.6e-107 391.3 268 67.2
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 8.6e-107 391.0 268 67.2
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 1.1e-106 390.6 265 69.1
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.5e-106 390.2 268 65.3
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 3.3e-106 389.0 268 66.8
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 4.3e-106 388.7 267 68.5
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 7.3e-106 387.9 267 70.8
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 9.5e-106 387.5 266 68.4
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.2e-105 387.1 268 68.7
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.4e-104 383.6 257 68.1
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 8.9e-104 380.9 323 57.6
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 8.9e-104 380.9 267 67.0
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 2.6e-103 379.4 265 67.2
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 5.8e-103 378.3 271 66.8
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 1.3e-102 377.1 285 63.2
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 2.4e-101 372.9 232 73.3
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.2e-101 372.5 304 58.9
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 3.2e-101 372.5 264 67.0
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 5.4e-101 371.7 270 64.1
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.2e-100 370.5 228 73.7
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.2e-100 370.5 298 59.4
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 1.3e-99 367.1 239 69.9
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 5.1e-99 365.2 380 49.2
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 7.3e-98 361.3 267 62.5
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.6e-97 360.1 310 57.1
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 2.1e-97 359.8 296 58.1
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.9e-96 354.4 373 49.6
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 9.9e-95 350.9 348 50.9
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.2e-94 349.7 263 62.0
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 2.1e-92 343.2 268 61.9
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 4.3e-90 335.5 267 61.0
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.1e-89 333.2 234 66.2
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.0e-88 328.9 269 58.7
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 6.9e-88 328.2 269 58.7
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.2e-87 327.4 266 59.4
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.2e-86 323.2 275 57.8
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 6.6e-83 311.6 183 78.1
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 1.1e-82 310.8 253 57.3
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 7.1e-77 291.6 179 74.3
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 3.5e-76 289.3 197 66.5
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 6.7e-75 285.0 256 54.3
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 4.3e-74 282.3 289 49.8
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 3.7e-73 279.3 218 60.6
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 6.9e-72 275.0 313 48.6
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 4.5e-71 272.3 178 67.4
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 2.5e-69 266.5 177 67.2
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 2.7e-68 263.1 259 50.6
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 9.0e-64 248.1 234 50.0
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 2.9e-62 243.0 141 74.5
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 7.4e-58 228.4 253 45.8
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 9.0e-56 221.5 247 44.1
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 8.5e-54 214.9 206 49.5
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.7e-46 190.7 186 52.2
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 6.7e-35 152.1 104 66.3
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 6.7e-35 152.1 104 66.3
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 3.3e-34 149.8 94 69.1
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.2e-29 133.3 88 68.2
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 9.8e-26 121.7 81 64.2
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 9.1e-24 115.2 83 65.1
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.2e-23 114.8 87 64.4
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 2.5e-21 107.1 58 82.8
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 3.2e-21 106.7 87 58.6
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 2.7e-20 103.6 61 70.5
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.7e-20 103.6 85 55.3
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 8.0e-20 102.1 87 58.6
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.4e-19 101.3 75 62.7
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.8e-19 100.9 75 61.3
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 6.8e-19 99.0 52 80.8
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 6.8e-19 99.0 101 46.5
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 1.2e-18 98.2 58 74.1
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.2e-18 98.2 51 74.5
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 3.4e-18 96.7 90 54.4
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 1.3e-17 94.7 84 56.0
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.3e-14 84.7 77 55.8
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 7.2e-13 79.0 60 65.0
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.6e-12 77.8 38 78.9
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 5.2e-11 72.8 35 80.0
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 9.8e-10 68.6 82 47.6
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 2.0e-07 60.8 44 54.5
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 1.7e-06 57.8 33 60.6
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 1.7e-06 57.8 33 60.6


User provided reference genes

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