Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 8.1e-196 687.6 556 100.0
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.8e-39 167.5 614 56.0
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 7.2e-35 152.9 620 54.8
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.6e-34 151.8 587 47.2
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 4.4e-32 143.7 619 54.0
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 9.7e-32 142.5 626 49.8
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 8.2e-31 139.4 626 49.7
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 1.2e-29 135.6 628 49.4
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 5.9e-29 133.3 617 53.3
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.3e-28 132.1 617 49.6
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 5.0e-28 130.2 626 49.2
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 2.5e-27 127.9 633 49.4
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.6e-26 125.2 626 49.5
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 2.7e-26 124.4 617 49.3
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 8.0e-26 122.9 618 48.9
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 8.0e-26 122.9 636 49.8
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 8.0e-26 122.9 631 49.8
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 3.0e-25 120.9 615 49.1
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 5.2e-25 120.2 624 51.1
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 5.2e-25 120.2 620 48.5
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 4.4e-24 117.1 620 48.4
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 4.4e-24 117.1 243 36.6
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 5.7e-24 116.7 632 47.2
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 1.3e-23 115.5 623 49.1
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 1.7e-23 115.2 242 37.6
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 2.2e-23 114.8 220 35.5
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 2.8e-23 114.4 624 47.9
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 3.7e-23 114.0 620 48.1
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 4.8e-23 113.6 610 49.3
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 6.3e-23 113.2 617 48.0
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 6.3e-23 113.2 620 48.4
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 8.2e-23 112.8 620 47.9
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 1.1e-22 112.5 243 37.0
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.4e-22 112.1 623 50.1
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.8e-22 111.7 623 48.2
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 2.4e-22 111.3 239 35.6
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 2.4e-22 111.3 239 35.6
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 3.1e-22 110.9 233 36.5
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 4.1e-22 110.5 611 50.9
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.2e-21 109.0 620 46.9
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 1.6e-21 108.6 642 48.9
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 1.6e-21 108.6 233 35.6
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.0e-21 108.2 614 50.5
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 2.0e-21 108.2 628 48.7
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 2.6e-21 107.8 616 48.5
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 2.6e-21 107.8 621 49.1
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 3.5e-21 107.5 646 46.6
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.5e-21 107.1 240 35.0
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 7.7e-21 106.3 644 47.7
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 7.7e-21 106.3 644 47.7
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.0e-20 105.9 242 34.3
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 1.0e-20 105.9 626 46.5
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.0e-20 105.9 625 50.2
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.3e-20 105.5 232 36.2
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.3e-20 105.5 232 36.2
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 2.2e-20 104.8 635 49.3
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 2.9e-20 104.4 218 37.6
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 2.9e-20 104.4 626 48.2
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.9e-20 104.4 625 48.2
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 3.8e-20 104.0 622 46.5
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 5.0e-20 103.6 626 47.4
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 5.0e-20 103.6 617 49.6
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 8.5e-20 102.8 627 48.2
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 1.1e-19 102.4 620 48.5
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.5e-19 102.1 618 49.5
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 1.5e-19 102.1 614 48.5
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 2.5e-19 101.3 620 49.7
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 3.2e-19 100.9 622 48.2
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 3.2e-19 100.9 622 46.6
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 4.2e-19 100.5 607 51.9
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 4.2e-19 100.5 620 49.7
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 5.5e-19 100.1 223 34.1
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 7.2e-19 99.8 234 33.3
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 9.4e-19 99.4 218 34.9
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 9.4e-19 99.4 609 48.4
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.2e-18 99.0 624 47.9
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 1.2e-18 99.0 621 47.7
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 2.1e-18 98.2 632 47.8
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 2.1e-18 98.2 236 36.0
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 6.1e-18 96.7 628 49.5
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 6.1e-18 96.7 623 46.7
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 8.0e-18 96.3 200 35.5
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.8e-17 95.1 147 36.7
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 2.3e-17 94.7 212 34.4
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.0e-17 94.4 620 47.7
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 4.0e-17 94.0 243 34.6
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 4.0e-17 94.0 243 36.2
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 5.2e-17 93.6 208 37.0
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 5.2e-17 93.6 215 36.7
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 5.2e-17 93.6 623 47.8
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 5.2e-17 93.6 609 49.6
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 5.2e-17 93.6 232 33.2
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 6.7e-17 93.2 201 34.3
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 6.7e-17 93.2 237 32.5
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 6.7e-17 93.2 237 32.5
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 8.8e-17 92.8 243 34.6
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 8.8e-17 92.8 613 48.1
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 8.8e-17 92.8 623 46.5
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.2e-16 92.4 622 47.6
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.5e-16 92.0 626 47.1
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 2.0e-16 91.7 215 36.3
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 2.0e-16 91.7 190 36.8
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 2.6e-16 91.3 238 31.5
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 3.3e-16 90.9 243 33.7
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 7.5e-16 89.7 622 47.6
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 7.5e-16 89.7 239 31.8
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 9.7e-16 89.4 189 37.6
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 1.3e-15 89.0 190 34.2
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.7e-15 88.6 212 34.9
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 1.7e-15 88.6 206 36.4
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 2.2e-15 88.2 215 35.8
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 2.2e-15 88.2 215 35.8
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.8e-15 87.8 231 32.0
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.8e-15 87.8 611 47.0
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 2.8e-15 87.8 241 29.9
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 2.8e-15 87.8 223 35.0
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.8e-15 87.8 585 49.1
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.7e-15 87.4 223 35.4
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 3.7e-15 87.4 628 46.2
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 4.8e-15 87.0 228 35.1
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 8.2e-15 86.3 203 37.9
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 1.4e-14 85.5 210 34.3
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.4e-14 85.5 206 35.9
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.4e-14 85.5 206 35.9
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.8e-14 85.1 227 35.2
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 1.8e-14 85.1 210 34.3
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 1.8e-14 85.1 239 32.2
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 5.3e-14 83.6 219 33.8
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 7.0e-14 83.2 234 32.5
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 2.0e-13 81.6 140 40.0
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 4.5e-13 80.5 243 30.0
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.3e-12 79.0 236 32.2
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 2.9e-12 77.8 184 35.3
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 6.5e-12 76.6 144 38.9
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 1.5e-11 75.5 219 32.4
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.9e-11 75.1 249 28.9
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.9e-11 75.1 155 38.1
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 4.2e-11 73.9 237 30.4
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 5.5e-11 73.6 164 36.0
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 5.5e-11 73.6 164 36.0
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 5.5e-11 73.6 250 30.8
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 9.4e-11 72.8 188 32.4
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 2.7e-10 71.2 117 41.0
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 4.7e-10 70.5 217 30.9
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 8.0e-10 69.7 161 32.9
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 1.0e-09 69.3 158 34.2
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 2.3e-09 68.2 211 34.1
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.0e-09 67.4 220 29.5
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.2e-08 65.9 207 30.4
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 1.2e-08 65.9 106 42.5
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 2.0e-08 65.1 83 41.0
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.0e-08 65.1 244 30.3
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 5.7e-08 63.5 98 41.8
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 5.7e-08 63.5 221 29.0
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 7.5e-08 63.2 159 30.8
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 7.5e-08 63.2 157 33.8
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 2.2e-07 61.6 199 31.2
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 2.8e-07 61.2 199 31.2
MBI05_g29100_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 6.3e-07 60.1 52 59.6
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 7.0e-06 56.6 106 37.7
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 7.0e-06 56.6 222 27.9


User provided reference genes

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