Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 3.1e-213 745.0 407 100.0
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 7.6e-143 511.1 427 71.0
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 1.3e-28 131.7 471 29.5
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.4e-27 127.5 490 30.0
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 3.8e-25 120.2 420 29.0
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 2.1e-23 114.4 423 28.6
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.3e-22 111.7 424 27.4
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 5.1e-22 109.8 450 26.7
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 5.1e-22 109.8 486 25.9
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 5.1e-22 109.8 453 27.2
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 6.7e-22 109.4 461 26.0
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.1e-21 108.6 475 26.9
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.1e-21 108.6 434 26.5
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-20 104.8 420 27.1
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-20 104.8 420 27.1
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 4.8e-20 103.2 410 27.1
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 6.2e-20 102.8 419 29.4
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 6.2e-20 102.8 443 28.0
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.1e-19 102.1 506 25.7
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 1.1e-19 102.1 425 25.6
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 1.4e-19 101.7 445 29.9
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.4e-19 101.7 421 27.1
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 3.1e-19 100.5 472 24.8
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 4.0e-19 100.1 427 26.9
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 5.3e-19 99.8 418 25.4
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 6.9e-19 99.4 436 28.2
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 6.9e-19 99.4 410 27.6
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.2e-18 98.6 424 26.7
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 2.0e-18 97.8 425 25.2
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 4.5e-18 96.7 480 26.2
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.7e-17 94.7 473 24.9
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 2.2e-17 94.4 484 25.2
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 2.2e-17 94.4 447 27.1
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 3.8e-17 93.6 449 28.1
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 3.8e-17 93.6 439 24.8
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 3.8e-17 93.6 480 27.9
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 3.8e-17 93.6 480 27.9
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 6.5e-17 92.8 408 26.7
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 6.5e-17 92.8 433 27.0
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.9e-16 91.3 433 28.6
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.5e-16 90.9 401 25.4
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 5.5e-16 89.7 471 24.0
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 5.5e-16 89.7 441 26.5
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 7.1e-16 89.4 424 26.7
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 1.2e-15 88.6 411 26.3
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 1.2e-15 88.6 487 23.2
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 4.6e-15 86.7 496 23.4
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 4.6e-15 86.7 509 25.5
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 4.6e-15 86.7 460 23.7
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 6.0e-15 86.3 425 29.4
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 6.0e-15 86.3 437 25.2
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 7.9e-15 85.9 424 25.0
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 1.3e-14 85.1 69 55.1
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 1.3e-14 85.1 497 24.3
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.3e-14 85.1 176 33.5
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.3e-14 85.1 176 33.5
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 1.8e-14 84.7 176 33.5
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 1.8e-14 84.7 460 25.2
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 1.8e-14 84.7 69 58.0
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.3e-14 84.3 199 31.7
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.3e-14 84.3 176 33.5
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 2.3e-14 84.3 440 26.1
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.3e-14 84.3 159 35.8
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 3.9e-14 83.6 489 24.1
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 3.9e-14 83.6 470 26.4
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 3.9e-14 83.6 423 26.5
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 5.1e-14 83.2 472 24.4
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 6.7e-14 82.8 485 23.9
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 1.1e-13 82.0 129 38.8
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 1.1e-13 82.0 427 27.9
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 1.5e-13 81.6 412 25.7
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.5e-13 81.6 102 46.1
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 1.9e-13 81.3 491 25.7
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 2.5e-13 80.9 453 23.8
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.5e-13 80.9 419 25.5
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.5e-13 80.9 400 26.2
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 3.3e-13 80.5 398 25.6
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 7.4e-13 79.3 406 25.9
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 9.6e-13 79.0 450 24.9
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.3e-12 78.6 468 24.1
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.3e-12 78.6 404 24.5
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 1.6e-12 78.2 212 28.8
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 2.1e-12 77.8 442 25.6
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 2.1e-12 77.8 442 25.6
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 2.8e-12 77.4 428 24.3
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 8.2e-12 75.9 401 25.4
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.1e-11 75.5 69 52.2
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.4e-11 75.1 415 25.3
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.4e-11 75.1 469 24.1
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 1.4e-11 75.1 404 24.8
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 2.4e-11 74.3 69 47.8
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 3.1e-11 73.9 66 48.5
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 3.1e-11 73.9 205 32.2
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 4.1e-11 73.6 66 48.5
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 6.9e-11 72.8 396 25.0
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 6.9e-11 72.8 396 25.0
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 1.5e-10 71.6 176 31.2
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.5e-10 71.6 391 25.3
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 2.6e-10 70.9 511 22.5
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 4.5e-10 70.1 165 32.7
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 5.8e-10 69.7 500 24.0
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 7.6e-10 69.3 160 33.8
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 7.6e-10 69.3 64 46.9
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 1.0e-09 68.9 194 30.9
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.7e-09 68.2 437 26.5
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 1.7e-09 68.2 427 24.6
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.2e-09 67.8 404 24.0
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.2e-09 67.8 64 48.4
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 2.2e-09 67.8 422 24.6
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 2.2e-09 67.8 429 24.7
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 5.0e-09 66.6 71 43.7
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 6.5e-09 66.2 427 24.6
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 8.4e-09 65.9 404 25.5
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 8.4e-09 65.9 64 46.9
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 8.4e-09 65.9 64 46.9
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.1e-08 65.5 378 23.0
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.4e-08 65.1 65 46.2
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.9e-08 64.7 196 31.6
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.5e-08 64.3 529 23.3
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 2.5e-08 64.3 445 23.6
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.5e-08 64.3 175 32.6
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 2.5e-08 64.3 196 31.6
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 3.2e-08 63.9 431 27.6
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 4.2e-08 63.5 196 30.6
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 5.5e-08 63.2 481 26.6
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.7e-07 60.8 548 22.1
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 3.5e-07 60.5 69 44.9
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 7.9e-07 59.3 167 29.9
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 7.9e-07 59.3 194 29.9
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 1.3e-06 58.5 68 42.6
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.8e-06 58.2 54 51.9
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 2.3e-06 57.8 125 35.2
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 3.9e-06 57.0 527 20.3
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 5.1e-06 56.6 69 42.0
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 6.7e-06 56.2 89 34.8
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 6.7e-06 56.2 176 30.1
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 8.7e-06 55.8 42 54.8


User provided reference genes

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