Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 0.0e+00 1822.4 955 100.0
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 0.0e+00 1331.6 1177 67.4
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 9.7e-64 249.6 202 66.3
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.7e-60 238.8 205 63.9
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 5.0e-60 237.3 204 64.7
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.9e-59 235.3 202 60.9
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.2e-59 234.6 202 64.9
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 3.2e-59 234.6 202 62.4
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 5.5e-59 233.8 202 62.9
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 5.5e-59 233.8 211 61.6
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 7.2e-59 233.4 246 56.9
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 9.4e-59 233.0 248 53.6
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.6e-58 232.3 202 64.4
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.6e-58 231.1 202 63.9
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 3.6e-58 231.1 202 63.9
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.8e-57 228.8 204 62.3
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 3.0e-57 228.0 204 61.8
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.0e-57 228.0 204 62.7
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.0e-57 228.0 219 59.8
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 3.9e-57 227.6 217 62.2
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 3.9e-57 227.6 254 52.8
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 5.1e-57 227.3 202 60.9
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 6.7e-57 226.9 195 61.5
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 8.8e-57 226.5 200 63.5
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 2.0e-56 225.3 202 60.4
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 4.4e-56 224.2 203 62.1
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 7.4e-56 223.4 225 57.3
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 7.4e-56 223.4 201 62.2
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 7.4e-56 223.4 263 52.5
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 7.4e-56 223.4 260 53.1
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 9.7e-56 223.0 219 58.9
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 9.7e-56 223.0 208 59.1
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 2.8e-55 221.5 205 61.5
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 4.8e-55 220.7 201 61.7
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 4.8e-55 220.7 202 59.9
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 8.2e-55 219.9 199 61.8
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 8.2e-55 219.9 203 62.6
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 2.4e-54 218.4 202 60.9
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 4.1e-54 217.6 204 61.3
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 4.1e-54 217.6 203 58.6
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 5.3e-54 217.2 203 62.1
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 5.3e-54 217.2 202 60.4
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 9.1e-54 216.5 257 50.2
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 9.1e-54 216.5 202 60.4
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 1.5e-53 215.7 201 59.2
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 2.0e-53 215.3 203 61.1
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 2.0e-53 215.3 254 51.6
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 2.6e-53 214.9 237 54.0
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 2.6e-53 214.9 216 57.9
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 3.4e-53 214.5 205 60.0
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 5.9e-53 213.8 202 59.9
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.0e-52 213.0 203 60.6
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.0e-52 213.0 212 59.0
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 1.3e-52 212.6 202 60.9
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.2e-52 211.8 218 57.8
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 3.8e-52 211.1 272 50.7
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 6.5e-52 210.3 204 59.8
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 6.5e-52 210.3 202 59.9
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.1e-51 209.5 184 63.6
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.4e-51 209.1 183 62.8
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.9e-51 208.8 245 50.6
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.9e-51 208.8 203 56.7
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 1.9e-51 208.8 232 52.6
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.2e-51 208.0 184 60.3
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 4.2e-51 207.6 221 57.5
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 9.4e-51 206.5 244 50.8
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.6e-50 205.7 232 54.3
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 2.1e-50 205.3 203 56.7
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 2.1e-50 205.3 189 59.8
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 2.7e-50 204.9 215 58.1
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 2.7e-50 204.9 246 52.0
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.0e-50 203.4 202 59.4
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.0e-49 203.0 199 60.8
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.8e-49 202.2 222 57.2
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 3.9e-49 201.1 249 49.4
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 5.2e-49 200.7 184 59.2
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 6.7e-49 200.3 236 53.4
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.1e-48 199.5 197 58.4
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.1e-48 199.5 218 51.4
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.1e-48 199.5 218 51.4
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 1.5e-48 199.1 235 51.5
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 2.0e-48 198.7 203 55.7
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 2.6e-48 198.4 203 54.7
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 3.3e-48 198.0 206 56.3
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 9.7e-48 196.4 202 54.5
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 9.7e-48 196.4 183 59.0
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 1.7e-47 195.7 225 54.7
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 2.2e-47 195.3 195 57.4
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.8e-46 192.2 203 54.2
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.1e-46 191.4 221 54.8
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 4.1e-46 191.0 212 53.3
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 5.3e-46 190.7 192 57.8
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 5.3e-46 190.7 256 48.8
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 2.6e-45 188.3 249 47.0
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 3.5e-45 188.0 211 53.1
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.3e-44 186.0 215 51.2
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.7e-44 185.7 202 55.9
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.7e-44 185.7 206 57.8
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 5.0e-44 184.1 202 55.4
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 5.0e-44 184.1 202 55.4
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 5.0e-44 184.1 225 53.8
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 6.5e-44 183.7 206 52.9
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.5e-44 183.7 202 55.4
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 1.1e-43 183.0 184 56.5
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 3.2e-43 181.4 202 52.5
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.2e-42 179.5 203 55.2
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 2.1e-42 178.7 206 56.3
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 1.2e-40 172.9 205 54.1
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.5e-40 172.6 205 55.6
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.6e-40 171.8 236 49.6
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 1.3e-39 169.5 197 51.3
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 3.7e-39 167.9 203 50.7
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 4.8e-39 167.5 207 52.7
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 4.8e-39 167.5 1464 24.5
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 6.3e-39 167.2 214 48.6
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 2.4e-38 165.2 208 51.0
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 7.0e-38 163.7 221 50.7
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.1e-35 156.4 212 48.1
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 4.2e-35 154.5 203 48.3
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 4.7e-34 151.0 203 46.3
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 6.1e-34 150.6 200 47.0
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 9.8e-32 143.3 225 43.1
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.3e-31 142.9 151 55.6
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.1e-30 139.8 244 42.2
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 2.4e-30 138.7 201 45.8
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.2e-29 136.3 203 44.3
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.6e-28 130.2 1548 22.9
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 3.3e-27 128.3 236 44.1
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.4e-24 117.9 90 72.2
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 4.9e-23 114.4 274 35.0
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 8.3e-23 113.6 249 36.1
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.5e-21 108.2 241 37.3
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.7e-20 105.9 201 41.3
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.5e-19 102.8 263 35.7
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.3e-19 101.3 237 36.3
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 4.4e-16 91.3 273 35.2
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.9e-14 85.9 195 37.4
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 4.1e-14 84.7 936 24.3
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.6e-13 82.8 92 50.0
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.0e-13 82.4 1039 24.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 3.3e-11 75.1 310 29.0
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.1e-09 70.1 234 31.2
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 7.5e-08 63.9 106 45.3
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.7e-07 62.8 585 24.8
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 4.1e-06 58.2 674 23.6
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.4e-06 57.8 691 23.6
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 5.4e-06 57.8 927 22.8


User provided reference genes

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