Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 2.6e-98 362.1 185 100.0
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 1.5e-85 319.7 183 89.1
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.1e-61 240.4 152 78.3
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 1.9e-61 239.6 159 75.5
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 6.9e-59 231.1 152 77.6
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 1.7e-57 226.5 149 76.5
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.1e-56 223.8 152 73.0
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 7.1e-56 221.1 152 74.3
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 2.1e-55 219.5 152 71.7
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 2.1e-55 219.5 169 65.7
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 2.7e-55 219.2 155 70.3
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 1.0e-54 217.2 152 69.7
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 1.3e-54 216.9 166 66.3
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.3e-54 216.9 150 72.0
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 1.3e-54 216.9 155 70.3
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 2.3e-54 216.1 152 67.8
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 3.0e-54 215.7 152 72.4
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 6.7e-54 214.5 155 68.4
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 6.7e-54 214.5 161 67.1
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 6.7e-54 214.5 157 66.2
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 6.7e-54 214.5 150 70.0
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 8.7e-54 214.2 149 71.1
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.5e-53 213.4 152 69.1
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.5e-53 213.4 157 67.5
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 1.9e-53 213.0 156 67.3
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 1.9e-53 213.0 159 66.7
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 2.5e-53 212.6 153 68.6
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 3.3e-53 212.2 152 67.1
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 3.3e-53 212.2 152 69.1
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 3.3e-53 212.2 165 64.8
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 3.3e-53 212.2 155 69.7
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 3.3e-53 212.2 149 71.1
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 4.3e-53 211.8 152 66.4
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 4.3e-53 211.8 152 69.1
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 4.3e-53 211.8 150 70.7
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 5.7e-53 211.5 161 62.7
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 5.7e-53 211.5 170 63.5
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 5.7e-53 211.5 167 65.9
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 7.4e-53 211.1 161 62.7
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 7.4e-53 211.1 157 67.5
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 7.4e-53 211.1 167 64.1
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 9.6e-53 210.7 149 69.8
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 9.6e-53 210.7 153 67.3
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.3e-52 210.3 155 69.0
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 1.3e-52 210.3 150 70.0
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 1.6e-52 209.9 161 64.0
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 2.1e-52 209.5 153 68.6
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 2.8e-52 209.1 162 64.8
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 2.8e-52 209.1 153 71.2
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 3.7e-52 208.8 170 63.5
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 3.7e-52 208.8 158 64.6
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 3.7e-52 208.8 171 62.0
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 3.7e-52 208.8 157 64.3
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 4.8e-52 208.4 152 70.4
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 4.8e-52 208.4 158 63.9
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 4.8e-52 208.4 158 64.6
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 4.8e-52 208.4 158 63.9
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 4.8e-52 208.4 151 66.2
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 6.3e-52 208.0 149 69.1
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 8.2e-52 207.6 146 71.2
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 8.2e-52 207.6 154 65.6
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 1.1e-51 207.2 158 63.9
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 1.1e-51 207.2 152 69.1
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 1.4e-51 206.8 152 65.1
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.4e-51 206.8 148 70.3
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 3.1e-51 205.7 152 68.4
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 3.1e-51 205.7 158 66.5
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 4.1e-51 205.3 158 63.9
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 4.1e-51 205.3 156 67.9
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 5.3e-51 204.9 161 61.5
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 5.3e-51 204.9 149 68.5
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 5.3e-51 204.9 152 64.5
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 5.3e-51 204.9 162 65.4
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 6.9e-51 204.5 154 66.2
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 9.0e-51 204.1 152 65.8
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 9.0e-51 204.1 153 68.6
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 1.2e-50 203.8 170 62.9
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 2.0e-50 203.0 152 67.1
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 2.0e-50 203.0 158 65.8
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 2.0e-50 203.0 152 66.4
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.0e-50 203.0 162 64.2
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 2.6e-50 202.6 155 65.2
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 7.6e-50 201.1 154 68.2
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 7.6e-50 201.1 174 60.9
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 7.6e-50 201.1 168 61.3
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 1.3e-49 200.3 160 64.4
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.7e-49 199.9 177 61.0
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 2.2e-49 199.5 152 65.8
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 2.9e-49 199.1 157 65.0
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.9e-49 199.1 149 67.1
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 2.9e-49 199.1 172 59.9
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 3.8e-49 198.7 161 61.5
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 6.5e-49 198.0 158 64.6
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 8.5e-49 197.6 153 67.3
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.1e-48 197.2 149 66.4
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 1.4e-48 196.8 152 65.1
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 1.9e-48 196.4 170 58.8
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 2.5e-48 196.1 152 64.5
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 3.2e-48 195.7 156 64.1
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 3.2e-48 195.7 176 59.1
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 1.2e-47 193.7 149 65.8
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.2e-47 193.7 152 64.5
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 2.7e-47 192.6 158 63.3
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 3.6e-47 192.2 150 63.3
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 3.6e-47 192.2 150 63.3
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 7.9e-47 191.0 150 65.3
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 7.9e-47 191.0 184 55.4
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 3.0e-46 189.1 186 56.5
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.5e-45 186.8 154 59.7
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.9e-45 186.4 148 64.2
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 2.5e-45 186.0 149 65.1
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 5.7e-45 184.9 164 59.1
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.3e-44 183.7 150 63.3
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.6e-44 183.3 150 60.7
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 9.1e-43 177.6 148 62.8
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 1.2e-42 177.2 153 62.1
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.5e-42 176.8 157 56.1
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 1.9e-40 169.9 196 51.5
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 2.5e-40 169.5 108 76.9
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 5.5e-40 168.3 138 63.0
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 7.9e-39 164.5 129 62.0
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 3.0e-38 162.5 189 47.1
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 3.9e-38 162.2 152 57.2
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 2.0e-37 159.8 126 61.9
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 7.4e-37 157.9 154 53.9
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 1.3e-36 157.1 120 63.3
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 4.8e-36 155.2 161 50.3
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 8.2e-36 154.5 152 55.9
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 9.1e-35 151.0 164 53.0
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 2.0e-34 149.8 125 56.8
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 7.7e-34 147.9 97 72.2
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 7.7e-34 147.9 128 62.5
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 5.0e-33 145.2 110 66.4
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 3.6e-31 139.0 110 63.6
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 6.7e-30 134.8 164 47.6
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.0e-29 133.3 109 63.3
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 3.1e-27 125.9 106 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 4.1e-27 125.6 103 63.1
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 2.6e-26 122.9 107 57.9
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 1.7e-25 120.2 157 44.6
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 8.0e-23 111.3 89 65.2
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 3.3e-21 105.9 86 65.1
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 5.7e-21 105.1 150 40.7
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 3.7e-20 102.4 184 35.3
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.4e-19 100.5 65 72.3
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 2.0e-18 96.7 82 61.0
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 2.2e-17 93.2 61 70.5
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 3.2e-16 89.4 69 66.7
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 1.8e-14 83.6 153 36.6
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 2.0e-13 80.1 194 27.8
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 3.4e-13 79.3 47 74.5
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 3.7e-12 75.9 59 59.3
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 3.7e-12 75.9 59 59.3
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 2.4e-11 73.2 152 32.9
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 7.7e-10 68.2 56 57.1
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 1.7e-09 67.0 54 64.8
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 2.9e-09 66.2 52 67.3
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 5.5e-08 62.0 45 62.2


User provided reference genes

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