Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0787 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 3.4e-123 446.8 221 100.0
TAR365G0466 Trochodendron aralioides HOM05D006926 ORTHO05D008863 1.3e-45 189.1 171 56.7
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 3.4e-43 181.0 169 52.1
Manes.03G195800 Manihot esculenta HOM05D006926 ORTHO05D008863 5.0e-42 177.2 175 52.0
Duzib151G0724 Durio zibethinus HOM05D006926 ORTHO05D008863 1.9e-41 175.3 180 49.4
Atru.chr4.2848 Acer truncatum HOM05D006926 ORTHO05D008863 7.2e-41 173.3 184 48.9
COL.COLO4_13863 Corchorus olitorius HOM05D006926 ORTHO05D008863 7.2e-41 173.3 225 46.7
TWI09G0560 Tripterygium wilfordii HOM05D006926 ORTHO05D008863 9.4e-41 172.9 164 51.8
Cpa.g.sc16.177 Carica papaya HOM05D006926 ORTHO05D008863 1.2e-40 172.6 181 47.5
HanXRQChr05g0150001 Helianthus annuus HOM05D006926 ORTHO05D008863 2.7e-40 171.4 170 50.0
Oeu029705.1 Olea europaea HOM05D006926 ORTHO05D008863 3.0e-39 167.9 193 47.7
Potri.010G014100 Populus trichocarpa HOM05D006926 ORTHO05D008863 5.1e-39 167.2 171 50.9
Rhsim04G0222900 Rhododendron simsii HOM05D006926 ORTHO05D008863 5.1e-39 167.2 171 48.5
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 8.8e-39 166.4 167 50.3
EL10Ac1g01925 Beta vulgaris HOM05D006926 ORTHO05D008863 1.5e-38 165.6 174 49.4
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 2.6e-38 164.9 165 50.3
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 3.3e-38 164.5 193 44.6
vmacro08158 Vaccinium macrocarpon HOM05D006926 ORTHO05D008863 3.3e-38 164.5 171 48.5
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 4.4e-38 164.1 171 51.5
Prupe.1G135500 Prunus persica HOM05D006926 ORTHO05D008863 4.4e-38 164.1 169 50.3
Gohir.D09G239500 Gossypium hirsutum HOM05D006926 ORTHO05D008863 5.7e-38 163.7 159 50.3
Gorai.006G262300 Gossypium raimondii HOM05D006926 ORTHO05D008863 5.7e-38 163.7 159 50.3
Nn6g34671 Nelumbo nucifera HOM05D006926 ORTHO05D008863 5.7e-38 163.7 171 46.8
Sabra10G0009000 Salix brachista HOM05D006926 ORTHO05D008863 9.7e-38 162.9 170 50.0
Gohir.A09G238600 Gossypium hirsutum HOM05D006926 ORTHO05D008863 1.3e-37 162.5 159 49.7
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 1.7e-37 162.2 167 50.3
FvH4_4g18230 Fragaria vesca HOM05D006926 ORTHO05D008863 1.7e-37 162.2 169 50.3
FAN12G2558 Fragaria x ananassa HOM05D006926 ORTHO05D008863 1.7e-37 162.2 169 50.3
FAN12G4333 Fragaria x ananassa HOM05D006926 ORTHO05D008863 1.7e-37 162.2 169 50.3
Lj9C380T3 Lonicera japonica HOM05D006926 ORTHO05D008863 2.8e-37 161.4 229 41.9
Nn2g14325 Nelumbo nucifera HOM05D006926 ORTHO05D008863 3.7e-37 161.0 170 44.7
Nitab4.5_0005852g0010 Nicotiana tabacum HOM05D006926 ORTHO05D008863 3.7e-37 161.0 180 46.7
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 4.8e-37 160.6 169 47.9
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 8.2e-37 159.8 169 46.7
AUR62035127 Chenopodium quinoa HOM05D006926 ORTHO05D008863 1.1e-36 159.5 180 47.8
Sc10g0006430 Simmondsia chinensis HOM05D006926 ORTHO05D008863 1.8e-36 158.7 170 48.2
Psat2g008440 Pisum sativum HOM05D006926 ORTHO05D008863 2.4e-36 158.3 165 46.1
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 2.4e-36 158.3 176 47.7
AUR62040613 Chenopodium quinoa HOM05D006926 ORTHO05D008863 3.1e-36 157.9 182 45.6
ClCG05G006130 Citrullus lanatus HOM05D006926 ORTHO05D008863 4.1e-36 157.5 171 48.5
Nitab4.5_0000059g0440 Nicotiana tabacum HOM05D006926 ORTHO05D008863 4.1e-36 157.5 180 46.1
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 5.3e-36 157.1 221 41.2
CAN.G185.37 Capsicum annuum HOM05D006926 ORTHO05D008863 7.0e-36 156.8 180 45.6
FAN17G0573 Fragaria x ananassa HOM05D006926 ORTHO05D008863 9.1e-36 156.4 168 48.2
Solyc01g080720.4 Solanum lycopersicum HOM05D006926 ORTHO05D008863 9.1e-36 156.4 180 46.1
Medtr5g095130 Medicago truncatula HOM05D006926 ORTHO05D008863 1.2e-35 156.0 169 45.0
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 1.5e-35 155.6 154 48.7
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 1.5e-35 155.6 168 48.8
PGSC0003DMG400006295 Solanum tuberosum HOM05D006926 ORTHO05D008863 2.0e-35 155.2 180 45.6
Peaxi162Scf01123g00213 Petunia axillaris HOM05D006926 ORTHO05D008863 2.6e-35 154.8 180 45.6
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 1.0e-34 152.9 159 48.4
SHI00269 Sapria himalayana HOM05D006926 ORTHO05D008863 1.3e-34 152.5 169 47.3
TPR.G14145 Trifolium pratense HOM05D006926 ORTHO05D008863 1.7e-34 152.1 170 44.1
A03p34960 Brassica napus HOM05D006926 ORTHO05D008863 3.8e-34 151.0 171 43.9
BraA03t12676Z Brassica rapa HOM05D006926 ORTHO05D008863 5.0e-34 150.6 194 40.7
CSS0048032 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 5.0e-34 150.6 171 48.0
MSTRG.10097 Avicennia marina HOM05D006926 ORTHO05D008863 1.9e-33 148.7 174 45.4
C03p42540 Brassica napus HOM05D006926 ORTHO05D008863 1.9e-33 148.7 196 38.8
PGR031G3585 Punica granatum HOM05D006926 ORTHO05D008863 5.5e-33 147.1 180 43.3
TPR.G14143 Trifolium pratense HOM05D006926 ORTHO05D008863 5.5e-33 147.1 170 43.5
Migut.G00155 Erythranthe guttata HOM05D006926 ORTHO05D008863 1.0e-31 142.9 173 44.5
SalBow1G7679 Salvia bowleyana HOM05D006926 ORTHO05D008863 3.9e-31 141.0 174 42.5
DCAR_006643 Daucus carota HOM05D006926 ORTHO05D008863 5.2e-31 140.6 167 44.9
Cc00_g07570 Coffea canephora HOM05D006926 ORTHO05D008863 8.8e-31 139.8 163 46.6
RcHm_v2.0_Chr4g0422371 Rosa chinensis HOM05D006926 ORTHO05D008863 8.8e-31 139.8 158 46.8
CDE11G0294 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 1.1e-30 139.4 165 44.2
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.3e-29 136.0 162 43.8
arahy.Tifrunner.gnm1.ann1.R7Y0VJ Arachis hypogaea HOM05D006926 ORTHO05D008863 1.7e-29 135.6 152 46.1
PSO302G0177 Papaver somniferum HOM05D006926 ORTHO05D008863 1.7e-29 135.6 157 42.7
AT3G06920 Arabidopsis thaliana HOM05D006926 ORTHO05D008863 4.8e-29 134.0 156 42.9
Cc01_g06580 Coffea canephora HOM05D006926 ORTHO05D008863 6.3e-29 133.7 162 45.7
AL3G18040 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 8.2e-29 133.3 156 42.9
AL3G18070 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 8.2e-29 133.3 156 42.9
AL3G18090 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 8.2e-29 133.3 156 42.9
Thhalv10020026m.g Eutrema salsugineum HOM05D006926 ORTHO05D008863 8.2e-29 133.3 181 39.8
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 1.1e-28 132.9 197 40.6
AL159U10010 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 1.8e-28 132.1 156 42.9
CARHR081530 Cardamine hirsuta HOM05D006926 ORTHO05D008863 4.1e-28 131.0 156 42.3
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 5.3e-28 130.6 150 45.3
arahy.Tifrunner.gnm1.ann1.DI2NU4 Arachis hypogaea HOM05D006926 ORTHO05D008863 1.6e-27 129.0 146 45.2
THA.LOC104827343 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 4.5e-27 127.5 196 39.3
Lalb_Chr17g0348851 Lupinus albus HOM05D006926 ORTHO05D008863 7.7e-27 126.7 156 41.0
Aa31LG5G17490 Aethionema arabicum HOM05D006926 ORTHO05D008863 1.3e-26 125.9 149 43.6
BolC3t16524H Brassica oleracea HOM05D006926 ORTHO05D008863 1.7e-26 125.6 154 39.6
Sp3g05870 Schrenkiella parvula HOM05D006926 ORTHO05D008863 1.9e-25 122.1 144 42.4
CsaV3_3G014680 Cucumis sativus L. HOM05D006926 ORTHO05D008863 2.5e-25 121.7 144 45.1
VMungo0647G0525 Vigna mungo HOM05D006926 ORTHO05D008863 5.5e-25 120.6 179 39.1
Dinv26449 Davidia involucrata HOM05D006926 ORTHO05D008863 1.4e-23 115.9 85 65.9
Sopen01g030780 Solanum pennellii HOM05D006926 ORTHO05D008863 3.4e-22 111.3 170 38.2
Eucgr.C02193 Eucalyptus grandis HOM05D006926 ORTHO05D008863 4.8e-21 107.5 135 43.7
Ca_06384_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 3.8e-18 97.8 128 41.4
Ca_29965_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 3.8e-18 97.8 128 41.4
SGA_v2.0_scaffold67G22630 Striga asiatica HOM05D006926 ORTHO05D008863 1.5e-17 95.9 173 35.3
ATR0796G196 Amborella trichopoda HOM05D006926 ORTHO05D008863 1.9e-17 95.5 143 35.7
HPP92_015997 Vanilla planifolia HOM05D006926 ORTHO05D008863 6.1e-16 90.5 127 37.8
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 2.6e-14 85.1 117 35.0
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 4.4e-14 84.3 110 36.4
LjContig00081g0009495 Lotus japonicus HOM05D006926 ORTHO05D008863 9.8e-14 83.2 133 32.3
Lalb_Chr10g0107371 Lupinus albus HOM05D006926 ORTHO05D008863 2.2e-13 82.0 141 32.6
Phvul.008G277600 Phaseolus vulgaris HOM05D006926 ORTHO05D008863 3.1e-12 78.2 111 36.9
Ciclev10007037m.g Citrus clementina HOM05D006926 ORTHO05D008863 4.5e-11 74.3 47 72.3
Carub.0003s0644 Capsella rubella HOM05D006926 ORTHO05D008863 1.9e-09 68.9 82 45.1
Cc04_g11470 Coffea canephora HOM05D002460 ORTHO05D002716 2.5e-09 68.6 158 26.6
CAN.G338.35 Capsicum annuum HOM05D002460 ORTHO05D002716 3.3e-09 68.2 158 25.3
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 5.5e-09 67.4 210 23.8
MSTRG.11497 Avicennia marina HOM05D002460 ORTHO05D002716 5.5e-09 67.4 158 25.3
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 1.2e-08 66.2 158 24.7
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 1.6e-08 65.9 199 22.1
SalBow5G5090 Salvia bowleyana HOM05D002460 ORTHO05D002716 2.1e-08 65.5 174 23.6
SalBow5G5327 Salvia bowleyana HOM05D002460 ORTHO05D002716 2.1e-08 65.5 174 23.6
Sopen03g031280 Solanum pennellii HOM05D002460 ORTHO05D002716 2.8e-08 65.1 158 24.7
TPR.G30149 Trifolium pratense HOM05D000424 ORTHO05D000355 2.8e-08 65.1 155 22.6
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 4.7e-08 64.3 202 23.8
Ciclev10018682m.g Citrus clementina HOM05D007128 ORTHO05D009059 8.0e-08 63.5 158 24.1
MBI16_g36318_MAGBIO Magnolia biondii HOM05D002460 ORTHO05D002716 8.0e-08 63.5 167 22.8
Os07g0249100 Oryza sativa ssp. japonica HOM05D006926 ORTHO05D008863 8.0e-08 63.5 111 34.2
Gohir.A11G040200 Gossypium hirsutum HOM05D002460 ORTHO05D002716 1.0e-07 63.2 156 25.6
Gorai.007G046800 Gossypium raimondii HOM05D002460 ORTHO05D002716 1.0e-07 63.2 156 26.9
Hma1.2p1_0951F.1_g240750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 1.0e-07 63.2 147 26.5
Zm00001eb304410 Zea mays HOM05D006926 ORTHO05D008863 1.0e-07 63.2 119 35.3
Migut.O00161 Erythranthe guttata HOM05D002460 ORTHO05D002716 1.4e-07 62.8 166 24.1
Gohir.D11G043400 Gossypium hirsutum HOM05D002460 ORTHO05D002716 1.8e-07 62.4 156 26.3
PGSC0003DMG400018187 Solanum tuberosum HOM05D002460 ORTHO05D002716 1.8e-07 62.4 158 24.1
GSVIVG01017733001 Vitis vinifera HOM05D006926 ORTHO05D008863 2.3e-07 62.0 83 42.2
ClCG08G005980 Citrullus lanatus HOM05D000424 ORTHO05D000355 3.0e-07 61.6 181 24.3
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 5.2e-07 60.8 144 27.1
Thhalv10010209m.g Eutrema salsugineum HOM05D002460 ORTHO05D002716 6.8e-07 60.5 153 27.5
Medtr1g108270 Medicago truncatula HOM05D000424 ORTHO05D000355 6.8e-07 60.5 155 24.5
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 6.8e-07 60.5 161 23.0
CsaV3_6G034100 Cucumis sativus L. HOM05D000424 ORTHO05D000355 1.2e-06 59.7 181 23.8
Sed0023429 Sechium edule HOM05D000424 ORTHO05D000355 1.5e-06 59.3 179 24.6
Potri.007G123600 Populus trichocarpa HOM05D007128 ORTHO05D009059 2.0e-06 58.9 165 23.6
FvH4_5g06330 Fragaria vesca HOM05D002460 ORTHO05D002716 2.6e-06 58.5 159 22.0
FAN04G0197 Fragaria x ananassa HOM05D002460 ORTHO05D002716 3.4e-06 58.2 154 23.4
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 3.4e-06 58.2 162 22.8
A10p05290 Brassica napus HOM05D007128 ORTHO05D009059 5.7e-06 57.4 148 23.0
FAN08G0993 Fragaria x ananassa HOM05D002460 ORTHO05D002716 5.7e-06 57.4 154 23.4
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 5.7e-06 57.4 215 21.4
PGR042G3217 Punica granatum HOM05D000424 ORTHO05D000355 7.5e-06 57.0 179 23.5
TPR.G3248 Trifolium pratense HOM05D000424 ORTHO05D000355 9.8e-06 56.6 143 23.1
VMungo1309G2539 Vigna mungo HOM05D007128 ORTHO05D009059 9.8e-06 56.6 202 23.3


User provided reference genes

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