Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0776 Ceratophyllum demersum HOM05D002115 ORTHO05D002263 1.9e-62 242.3 115 100.0
CSS0007528 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 4.8e-26 121.3 119 55.5
CSS0039958 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 4.8e-26 121.3 119 55.5
Migut.H02057 Erythranthe guttata HOM05D002115 ORTHO05D002263 3.1e-25 118.6 108 61.1
Dinv21343 Davidia involucrata HOM05D002115 ORTHO05D002263 4.1e-25 118.2 87 70.1
CAN.G585.4 Capsicum annuum HOM05D002115 ORTHO05D002263 6.9e-25 117.5 88 64.8
Solyc07g056030.3 Solanum lycopersicum HOM05D002115 ORTHO05D002263 9.0e-25 117.1 88 65.9
Sopen07g029380 Solanum pennellii HOM05D002115 ORTHO05D002263 9.0e-25 117.1 88 65.9
Nitab4.5_0004166g0030 Nicotiana tabacum HOM05D002115 ORTHO05D002263 1.2e-24 116.7 88 64.8
PGSC0003DMG400031100 Solanum tuberosum HOM05D002115 ORTHO05D002263 1.2e-24 116.7 88 64.8
Peaxi162Scf00111g00532 Petunia axillaris HOM05D002115 ORTHO05D002263 2.0e-24 115.9 88 63.6
Cc05_g09970 Coffea canephora HOM05D002115 ORTHO05D002263 7.6e-24 114.0 114 55.3
Lj8A139T62 Lonicera japonica HOM05D002115 ORTHO05D002263 7.6e-24 114.0 88 63.6
Actinidia18815 Actinidia chinensis HOM05D002115 ORTHO05D002263 1.0e-23 113.6 119 52.9
Actinidia35188 Actinidia chinensis HOM05D002115 ORTHO05D002263 2.9e-23 112.1 88 64.8
Nn3g20355 Nelumbo nucifera HOM05D002115 ORTHO05D002263 2.9e-23 112.1 106 55.7
Atru.chr10.1123 Acer truncatum HOM05D002115 ORTHO05D002263 3.8e-23 111.7 106 57.5
Duzib192G0494 Durio zibethinus HOM05D002115 ORTHO05D002263 5.0e-23 111.3 106 59.4
Gohir.A10G043600 Gossypium hirsutum HOM05D002115 ORTHO05D002263 5.0e-23 111.3 83 67.5
TAR629G1494 Trochodendron aralioides HOM05D002115 ORTHO05D002263 6.5e-23 110.9 106 57.5
Hund10312 Selenicereus undatus HOM05D002115 ORTHO05D002263 8.4e-23 110.5 104 59.6
Ciclev10014165m.g Citrus clementina HOM05D002115 ORTHO05D002263 1.1e-22 110.2 106 56.6
Gohir.D10G044800 Gossypium hirsutum HOM05D002115 ORTHO05D002263 1.1e-22 110.2 83 66.3
Gorai.011G047800 Gossypium raimondii HOM05D002115 ORTHO05D002263 1.1e-22 110.2 83 66.3
Rhsim04G0032200 Rhododendron simsii HOM05D002115 ORTHO05D002263 1.4e-22 109.8 98 58.2
Sc07g0003090 Simmondsia chinensis HOM05D002115 ORTHO05D002263 1.4e-22 109.8 110 58.2
CiPaw.10G089000 Carya illinoinensis HOM05D002115 ORTHO05D002263 1.9e-22 109.4 107 56.1
CSS0017264 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 2.5e-22 109.0 86 67.4
CSS0045142 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 2.5e-22 109.0 86 67.4
Haze_05655 Corylus avellana HOM05D002115 ORTHO05D002263 2.5e-22 109.0 106 56.6
MBI18_g11225_MAGBIO Magnolia biondii HOM05D002115 ORTHO05D002263 2.5e-22 109.0 85 63.5
Cpa.g.sc229.1 Carica papaya HOM05D002115 ORTHO05D002263 3.2e-22 108.6 89 64.0
AUR62041253 Chenopodium quinoa HOM05D002115 ORTHO05D002263 3.2e-22 108.6 104 57.7
RcHm_v2.0_Chr5g0014771 Rosa chinensis HOM05D002115 ORTHO05D002263 4.2e-22 108.2 106 57.5
Duzib160G0249 Durio zibethinus HOM05D002115 ORTHO05D002263 5.5e-22 107.8 113 53.1
Gohir.D06G144500 Gossypium hirsutum HOM05D002115 ORTHO05D002263 7.2e-22 107.5 109 56.9
GSVIVG01021543001 Vitis vinifera HOM05D002115 ORTHO05D002263 7.2e-22 107.5 106 58.5
Duzib235G1503 Durio zibethinus HOM05D002115 ORTHO05D002263 9.3e-22 107.1 87 64.4
SGA_v2.0_scaffold130G34243 Striga asiatica HOM05D002115 ORTHO05D002263 9.3e-22 107.1 85 64.7
TAR627G0134 Trochodendron aralioides HOM05D002115 ORTHO05D002263 9.3e-22 107.1 88 64.8
Thecc.06G145100 Theobroma cacao HOM05D002115 ORTHO05D002263 1.2e-21 106.7 106 57.5
Potri.011G081200 Populus trichocarpa HOM05D002115 ORTHO05D002263 1.6e-21 106.3 106 57.5
Manes.17G074000 Manihot esculenta HOM05D002115 ORTHO05D002263 2.1e-21 105.9 105 54.3
unitig_52.g17392 Utricularia gibba HOM05D002115 ORTHO05D002263 2.1e-21 105.9 75 69.3
Eucgr.F03190 Eucalyptus grandis HOM05D002115 ORTHO05D002263 2.7e-21 105.5 106 54.7
Sabra11G0064700 Salix brachista HOM05D002115 ORTHO05D002263 2.7e-21 105.5 96 61.5
QL05p055199 Quercus lobata HOM05D002115 ORTHO05D002263 3.5e-21 105.1 87 62.1
Manes.15G124650 Manihot esculenta HOM05D002115 ORTHO05D002263 4.6e-21 104.8 106 55.7
ATR1098G055 Amborella trichopoda HOM05D002115 ORTHO05D002263 6.1e-21 104.4 110 51.8
AUR62042840 Chenopodium quinoa HOM05D002115 ORTHO05D002263 6.1e-21 104.4 96 60.4
FvH4_3g05100 Fragaria vesca HOM05D002115 ORTHO05D002263 6.1e-21 104.4 106 56.6
PSO541G2268 Papaver somniferum HOM05D002115 ORTHO05D002263 6.1e-21 104.4 107 55.1
PSO675G7753 Papaver somniferum HOM05D002115 ORTHO05D002263 6.1e-21 104.4 107 55.1
MELO3C002767.2 Cucumis melo HOM05D002115 ORTHO05D002263 7.9e-21 104.0 90 63.3
CsaV3_1G036830 Cucumis sativus L. HOM05D002115 ORTHO05D002263 7.9e-21 104.0 90 63.3
Aqoxy4G00083 Aquilegia oxysepala HOM05D002115 ORTHO05D002263 1.0e-20 103.6 107 55.1
FAN11G3721 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.0e-20 103.6 105 56.2
Oeu012707.1 Olea europaea HOM05D002115 ORTHO05D002263 1.0e-20 103.6 78 61.5
FAN16G0539 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.8e-20 102.8 106 56.6
FAN16G1035 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.8e-20 102.8 106 56.6
MD05G1280300 Malus domestica HOM05D002115 ORTHO05D002263 1.8e-20 102.8 106 54.7
Sed0015162 Sechium edule HOM05D002115 ORTHO05D002263 2.3e-20 102.4 92 62.0
Gohir.A06G139800 Gossypium hirsutum HOM05D002115 ORTHO05D002263 3.0e-20 102.1 91 61.5
PGR031G3691 Punica granatum HOM05D002115 ORTHO05D002263 3.0e-20 102.1 89 61.8
TWI73G1220 Tripterygium wilfordii HOM05D002115 ORTHO05D002263 3.0e-20 102.1 87 62.1
DCAR_019646 Daucus carota HOM05D002115 ORTHO05D002263 3.9e-20 101.7 107 55.1
SGA_v2.0_scaffold4G02144 Striga asiatica HOM05D002115 ORTHO05D002263 5.1e-20 101.3 87 62.1
TWI09G0160 Tripterygium wilfordii HOM05D002115 ORTHO05D002263 5.1e-20 101.3 85 62.4
Gorai.010G168200 Gossypium raimondii HOM05D002115 ORTHO05D002263 6.7e-20 100.9 95 60.0
Ah.06g187380 Amaranthus hybridus HOM05D002115 ORTHO05D002263 8.7e-20 100.5 85 62.4
MSTRG.14265 Avicennia marina HOM05D002115 ORTHO05D002263 8.7e-20 100.5 106 53.8
EL10Ac4g08514 Beta vulgaris HOM05D002115 ORTHO05D002263 8.7e-20 100.5 71 70.4
CiPaw.09G120200 Carya illinoinensis HOM05D002115 ORTHO05D002263 8.7e-20 100.5 104 53.8
Lalb_Chr07g0187511 Lupinus albus HOM05D002115 ORTHO05D002263 8.7e-20 100.5 105 50.5
DCAR_013808 Daucus carota HOM05D002115 ORTHO05D002263 1.1e-19 100.1 96 55.2
Sed0026904 Sechium edule HOM05D002115 ORTHO05D002263 1.1e-19 100.1 110 54.5
FAN21G3828 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.5e-19 99.8 87 60.9
SEGI_31461 Sequoiadendron giganteum HOM05D002115 ORTHO05D002263 1.5e-19 99.8 93 57.0
Glyma.08G174100 Glycine max HOM05D002115 ORTHO05D002263 3.3e-19 98.6 76 65.8
MD10G1258600 Malus domestica HOM05D002115 ORTHO05D002263 4.3e-19 98.2 106 53.8
CANSAT35G1551 Cannabis sativa HOM05D002115 ORTHO05D002263 5.7e-19 97.8 88 58.0
arahy.Tifrunner.gnm1.ann1.2Y4SM6 Arachis hypogaea HOM05D002115 ORTHO05D002263 7.4e-19 97.4 107 51.4
ECA236G4492 Erigeron canadensis HOM05D002115 ORTHO05D002263 7.4e-19 97.4 107 56.1
Lsat_1_v5_gn_9_103361 Lactuca sativa HOM05D002115 ORTHO05D002263 1.3e-18 96.7 86 61.6
Psat1g002000 Pisum sativum HOM05D002115 ORTHO05D002263 1.3e-18 96.7 76 64.5
ECA240G2296 Erigeron canadensis HOM05D002115 ORTHO05D002263 1.6e-18 96.3 97 53.6
Lj3g0017411 Lotus japonicus HOM05D002115 ORTHO05D002263 1.6e-18 96.3 93 57.0
SalBow7G3109 Salvia bowleyana HOM05D002115 ORTHO05D002263 1.6e-18 96.3 89 59.6
SalBow7G3339 Salvia bowleyana HOM05D002115 ORTHO05D002263 1.6e-18 96.3 89 59.6
arahy.Tifrunner.gnm1.ann1.X0DSCJ Arachis hypogaea HOM05D002115 ORTHO05D002263 2.2e-18 95.9 94 53.2
Phvul.005G054700 Phaseolus vulgaris HOM05D002115 ORTHO05D002263 2.2e-18 95.9 76 64.5
THA.LOC104808073 Tarenaya hassleriana HOM05D002115 ORTHO05D002263 2.8e-18 95.5 79 58.2
arahy.Tifrunner.gnm1.ann1.949BMZ Arachis hypogaea HOM05D002115 ORTHO05D002263 6.3e-18 94.4 107 50.5
BraA08t35033Z Brassica rapa HOM05D002115 ORTHO05D002263 6.3e-18 94.4 95 51.6
Glyma.15G253100 Glycine max HOM05D002115 ORTHO05D002263 6.3e-18 94.4 72 66.7
Medtr2g064880 Medicago truncatula HOM05D002115 ORTHO05D002263 6.3e-18 94.4 76 61.8
Prupe.4G085100 Prunus persica HOM05D002115 ORTHO05D002263 6.3e-18 94.4 106 51.9
TWI53G2036 Tripterygium wilfordii HOM05D002115 ORTHO05D002263 6.3e-18 94.4 87 58.6
arahy.Tifrunner.gnm1.ann1.GIH6UL Arachis hypogaea HOM05D002115 ORTHO05D002263 1.1e-17 93.6 103 54.4
arahy.Tifrunner.gnm1.ann1.T6TPBC Arachis hypogaea HOM05D002115 ORTHO05D002263 1.1e-17 93.6 103 54.4
Glyma.05G143100 Glycine max HOM05D002115 ORTHO05D002263 1.1e-17 93.6 107 52.3
Lj4g0017001 Lotus japonicus HOM05D002115 ORTHO05D002263 1.1e-17 93.6 106 49.1
Lalb_Chr13g0294001 Lupinus albus HOM05D002115 ORTHO05D002263 1.1e-17 93.6 88 53.4
HPP92_014003 Vanilla planifolia HOM05D002115 ORTHO05D002263 1.1e-17 93.6 92 58.7
HanXRQChr11g0330041 Helianthus annuus HOM05D002115 ORTHO05D002263 1.4e-17 93.2 87 59.8
TPR.G27155 Trifolium pratense HOM05D002115 ORTHO05D002263 1.4e-17 93.2 76 61.8
HPP92_017719 Vanilla planifolia HOM05D002115 ORTHO05D002263 1.4e-17 93.2 104 53.8
BcaC07g38835 Brassica carinata HOM05D002115 ORTHO05D002263 1.8e-17 92.8 77 58.4
BcaC07g38836 Brassica carinata HOM05D002115 ORTHO05D002263 1.8e-17 92.8 77 58.4
Ca_03710_v3 Cicer arietinum L. HOM05D002115 ORTHO05D002263 1.8e-17 92.8 80 61.2
Glyma.08G099500 Glycine max HOM05D002115 ORTHO05D002263 1.8e-17 92.8 88 56.8
VMungo1080G0789 Vigna mungo HOM05D002115 ORTHO05D002263 1.8e-17 92.8 76 63.2
BcaB07g34041 Brassica carinata HOM05D002115 ORTHO05D002263 2.4e-17 92.4 77 58.4
BcaC05g25656 Brassica carinata HOM05D002115 ORTHO05D002263 2.4e-17 92.4 77 58.4
A08p31040 Brassica napus HOM05D002115 ORTHO05D002263 2.4e-17 92.4 77 58.4
C05p15630 Brassica napus HOM05D002115 ORTHO05D002263 2.4e-17 92.4 77 58.4
BolC5t30270H Brassica oleracea HOM05D002115 ORTHO05D002263 2.4e-17 92.4 77 58.4
Ca_18162_v3 Cicer arietinum L. HOM05D002115 ORTHO05D002263 2.4e-17 92.4 106 51.9
THA.LOC104813972 Tarenaya hassleriana HOM05D002115 ORTHO05D002263 2.4e-17 92.4 87 52.9
Zm00001eb300000 Zea mays HOM05D002115 ORTHO05D002263 2.4e-17 92.4 80 55.0
Dinv30692 Davidia involucrata HOM05D002115 ORTHO05D002263 3.1e-17 92.0 87 55.2
A06p13130 Brassica napus HOM05D002115 ORTHO05D002263 4.1e-17 91.7 77 57.1
BraA06t24471Z Brassica rapa HOM05D002115 ORTHO05D002263 4.1e-17 91.7 77 57.1
Lsat_1_v5_gn_7_99441 Lactuca sativa HOM05D002115 ORTHO05D002263 4.1e-17 91.7 89 59.6
Sp1g15350 Schrenkiella parvula HOM05D002115 ORTHO05D002263 4.1e-17 91.7 77 58.4
Carub.0001s1696 Capsella rubella HOM05D002115 ORTHO05D002263 6.9e-17 90.9 77 59.7
Lalb_Chr25g0285231 Lupinus albus HOM05D002115 ORTHO05D002263 6.9e-17 90.9 93 53.8
AL1G29450 Arabidopsis lyrata HOM05D002115 ORTHO05D002263 1.2e-16 90.1 77 58.4
CARHR017790 Cardamine hirsuta HOM05D002115 ORTHO05D002263 1.2e-16 90.1 77 58.4
Thhalv10006705m.g Eutrema salsugineum HOM05D002115 ORTHO05D002263 1.2e-16 90.1 77 57.1
AT1G17210 Arabidopsis thaliana HOM05D002115 ORTHO05D002263 1.5e-16 89.7 77 58.4
VMungo0251G1773 Vigna mungo HOM05D002115 ORTHO05D002263 2.0e-16 89.4 107 50.5
Aa31LG4G2610 Aethionema arabicum HOM05D002115 ORTHO05D002263 2.6e-16 89.0 77 58.4
Zm00001eb059900 Zea mays HOM05D002115 ORTHO05D002263 3.4e-16 88.6 103 47.6
AagrBONN_evm.TU.Sc2ySwM_344.1038 Anthoceros agrestis HOM05D002115 ORTHO05D002263 4.5e-16 88.2 70 58.6
Phvul.002G178200 Phaseolus vulgaris HOM05D002115 ORTHO05D002263 4.5e-16 88.2 107 48.6
SHI24853 Sapria himalayana HOM05D002115 ORTHO05D002263 7.7e-16 87.4 83 55.4
Os07g0150500 Oryza sativa ssp. japonica HOM05D002115 ORTHO05D002263 1.0e-15 87.0 97 48.5
TPR.G9578 Trifolium pratense HOM05D002115 ORTHO05D002263 5.0e-15 84.7 106 50.9
Os03g0785300 Oryza sativa ssp. japonica HOM05D002115 ORTHO05D002263 1.1e-14 83.6 83 53.0
HanXRQChr09g0257501 Helianthus annuus HOM05D002115 ORTHO05D002263 1.4e-14 83.2 84 54.8
Medtr8g079465 Medicago truncatula HOM05D002115 ORTHO05D002263 1.9e-14 82.8 107 50.5
ClCG03G006530 Citrullus lanatus HOM05D002115 ORTHO05D002263 3.2e-14 82.0 62 66.1
Psat7g134600 Pisum sativum HOM05D002115 ORTHO05D002263 6.1e-13 77.8 85 54.1
SMO239G0201 Selaginella moellendorffii HOM05D002115 ORTHO05D002263 4.3e-11 71.6 68 52.9
SEGI_20870 Sequoiadendron giganteum HOM05D002115 ORTHO05D002263 6.9e-09 64.3 85 41.2
Mapoly0044s0042 Marchantia polymorpha HOM05D002115 ORTHO05D002263 9.1e-09 63.9 88 42.0
vmacro09450 Vaccinium macrocarpon HOM05D002115 ORTHO05D002263 3.4e-08 62.0 37 73.0
Pp3c7_5540 Physcomitrium patens HOM05D002115 ORTHO05D002263 1.0e-07 60.5 73 45.2
HanXRQChr09g0269821 Helianthus annuus HOM05D002115 ORTHO05D002263 4.2e-06 55.1 94 40.4
SMO358G0737 Selaginella moellendorffii HOM05D002115 ORTHO05D002263 7.2e-06 54.3 49 44.9


User provided reference genes

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