Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 8.2e-82 307.8 162 100.0
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 2.6e-72 276.2 166 88.6
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.2e-59 234.2 159 81.8
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.5e-59 233.8 153 80.4
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 4.4e-59 232.3 160 77.5
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 5.7e-59 231.9 160 80.0
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 5.7e-59 231.9 158 78.5
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.3e-58 230.7 159 81.1
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 2.2e-58 229.9 148 83.1
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 3.7e-58 229.2 149 80.5
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 3.7e-58 229.2 154 79.9
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 3.7e-58 229.2 148 83.1
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 4.8e-58 228.8 160 77.5
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 8.3e-58 228.0 156 77.6
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 1.1e-57 227.6 153 80.4
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 1.8e-57 226.9 160 78.1
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.8e-57 226.9 156 78.2
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 2.4e-57 226.5 148 82.4
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 3.1e-57 226.1 149 79.9
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 4.1e-57 225.7 160 75.6
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 5.4e-57 225.3 148 80.4
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 9.1e-57 224.6 148 80.4
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 9.1e-57 224.6 149 78.5
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.2e-56 224.2 154 79.9
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.5e-56 222.6 144 81.2
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.5e-56 222.6 148 79.7
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 3.5e-56 222.6 164 76.2
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 4.5e-56 222.2 149 81.2
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 4.5e-56 222.2 145 81.4
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 5.9e-56 221.9 160 76.9
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 7.7e-56 221.5 153 78.4
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 7.7e-56 221.5 158 76.6
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 1.0e-55 221.1 158 75.9
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 1.3e-55 220.7 162 75.9
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 1.3e-55 220.7 148 79.7
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 1.3e-55 220.7 150 78.7
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 1.3e-55 220.7 154 76.6
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 1.7e-55 220.3 168 73.8
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 2.3e-55 219.9 149 77.9
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 2.3e-55 219.9 148 79.7
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 2.9e-55 219.5 148 78.4
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 2.9e-55 219.5 155 78.1
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.9e-55 219.5 156 76.3
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 3.8e-55 219.2 154 78.6
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 3.8e-55 219.2 148 77.7
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 5.0e-55 218.8 156 73.7
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 5.0e-55 218.8 151 77.5
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.0e-55 218.8 148 79.1
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 8.6e-55 218.0 149 78.5
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 8.6e-55 218.0 157 77.7
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-54 217.6 156 75.6
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.5e-54 217.2 159 76.1
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.5e-54 217.2 148 78.4
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 1.9e-54 216.9 153 74.5
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 1.9e-54 216.9 154 77.9
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 1.9e-54 216.9 151 77.5
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.9e-54 216.9 145 80.0
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 1.9e-54 216.9 148 76.4
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 2.5e-54 216.5 162 72.2
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.3e-54 216.1 148 77.7
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 3.3e-54 216.1 144 77.8
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 3.3e-54 216.1 167 71.9
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 4.2e-54 215.7 144 80.6
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 4.2e-54 215.7 144 80.6
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 5.5e-54 215.3 147 78.9
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 7.2e-54 214.9 144 77.1
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 9.5e-54 214.5 149 79.2
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 1.2e-53 214.2 162 75.3
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 1.2e-53 214.2 151 76.2
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.1e-53 213.4 144 79.2
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 2.1e-53 213.4 144 76.4
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 3.6e-53 212.6 145 77.2
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.7e-53 212.2 144 79.9
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 6.1e-53 211.8 142 78.2
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 8.0e-53 211.5 158 75.9
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 8.0e-53 211.5 158 75.9
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 1.0e-52 211.1 148 75.0
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.4e-52 210.7 156 75.6
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 1.4e-52 210.7 154 75.3
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 1.4e-52 210.7 155 74.8
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.4e-52 210.7 163 73.6
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 1.4e-52 210.7 142 77.5
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 1.4e-52 210.7 149 77.9
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 2.3e-52 209.9 144 76.4
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 8.9e-52 208.0 155 72.3
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 1.2e-51 207.6 140 78.6
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 3.4e-51 206.1 158 74.1
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 3.4e-51 206.1 148 73.6
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 3.4e-51 206.1 158 72.8
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 4.4e-51 205.7 150 74.0
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 7.5e-51 204.9 154 74.0
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.7e-50 203.8 133 82.0
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 2.2e-50 203.4 159 73.0
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 2.2e-50 203.4 159 71.1
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 3.7e-50 202.6 132 79.5
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 1.4e-49 200.7 133 81.2
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.4e-49 200.7 134 80.6
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.4e-49 200.7 142 76.1
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.4e-49 200.7 142 76.1
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 1.8e-49 200.3 138 79.0
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 5.4e-49 198.7 160 70.6
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 7.0e-49 198.4 156 73.1
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 1.2e-48 197.6 132 80.3
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 3.5e-48 196.1 165 67.3
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.0e-47 194.5 168 67.3
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.0e-47 194.5 168 67.3
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.3e-47 194.1 152 71.1
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.3e-47 194.1 152 71.1
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.3e-47 194.1 152 71.1
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 3.9e-47 192.6 170 65.3
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 5.0e-47 192.2 148 72.3
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 5.0e-47 192.2 148 72.3
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 5.0e-47 192.2 148 72.3
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 5.0e-47 192.2 145 73.8
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 5.0e-47 192.2 130 79.2
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 6.6e-47 191.8 172 64.5
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 8.6e-47 191.4 161 68.9
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 1.5e-46 190.7 144 73.6
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 2.5e-46 189.9 148 71.6
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 2.5e-46 189.9 148 71.6
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 4.3e-46 189.1 135 75.6
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 7.3e-46 188.3 146 69.9
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 1.2e-45 187.6 148 71.6
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 1.6e-45 187.2 148 70.3
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 2.1e-45 186.8 146 69.9
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 2.8e-45 186.4 148 68.9
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 8.9e-44 181.4 147 70.1
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 1.5e-43 180.6 138 73.9
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 3.4e-43 179.5 164 68.3
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 4.4e-43 179.1 144 71.5
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.2e-40 171.0 163 62.0
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 6.6e-39 165.2 137 65.0
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 8.6e-39 164.9 168 61.3
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 4.3e-38 162.5 159 59.7
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 3.6e-37 159.5 155 65.2
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 6.2e-37 158.7 114 77.2
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 4.0e-36 156.0 133 62.4
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 3.2e-33 146.4 121 70.2
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 2.3e-31 140.2 135 63.0
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 1.5e-27 127.5 108 64.8
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 2.0e-27 127.1 127 55.9
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 2.6e-27 126.7 120 59.2
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 8.3e-26 121.7 79 73.4
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 7.1e-25 118.6 92 75.0
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 3.5e-24 116.3 112 61.6
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 1.3e-23 114.4 157 51.6
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 3.6e-21 106.3 147 48.3
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 5.8e-19 99.0 147 44.9
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.3e-18 97.8 142 47.2
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 5.4e-17 92.4 86 64.0
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 2.5e-14 83.6 90 56.7
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 2.5e-14 83.6 90 56.7
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.4e-12 77.8 65 72.3
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 1.4e-12 77.8 78 62.8
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.1e-12 76.6 63 71.4
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 1.7e-10 70.9 76 53.9
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 6.0e-08 62.4 65 44.6


User provided reference genes

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