Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.8e-140 501.1 250 100.0
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.7e-92 343.2 243 68.7
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.9e-88 329.7 243 64.2
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.1e-86 323.9 243 65.0
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.4e-86 323.6 245 64.5
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 3.1e-86 322.4 248 63.3
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.5e-85 320.1 240 66.2
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 4.4e-85 318.5 240 65.0
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 7.6e-85 317.8 243 64.6
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.9e-84 315.1 237 70.9
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.4e-83 313.5 240 62.5
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 1.9e-83 313.2 238 62.2
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 3.2e-83 312.4 244 63.1
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 7.1e-83 311.2 242 60.3
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 1.2e-82 310.5 250 61.2
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 1.2e-82 310.5 238 62.6
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.6e-82 310.1 251 62.2
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 4.6e-82 308.5 239 62.8
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.3e-81 307.0 245 58.8
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 2.3e-81 306.2 243 59.7
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 3.0e-81 305.8 216 67.1
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.0e-81 305.8 247 61.9
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.9e-81 305.4 247 61.5
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 6.6e-81 304.7 242 61.6
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 6.6e-81 304.7 251 62.9
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 6.6e-81 304.7 245 58.8
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 1.1e-80 303.9 234 63.2
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 1.5e-80 303.5 242 62.8
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 1.9e-80 303.1 245 61.2
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 1.9e-80 303.1 241 62.2
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 2.5e-80 302.8 241 61.0
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 4.3e-80 302.0 236 60.2
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 7.3e-80 301.2 250 60.4
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 7.3e-80 301.2 259 57.9
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.3e-79 300.4 240 61.2
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 1.6e-79 300.1 248 60.1
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.1e-79 299.7 241 61.4
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 2.1e-79 299.7 249 61.0
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 2.8e-79 299.3 254 58.7
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 3.6e-79 298.9 240 59.6
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 4.8e-79 298.5 250 59.2
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 4.8e-79 298.5 240 60.0
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 6.2e-79 298.1 248 61.3
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 6.2e-79 298.1 247 57.5
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 8.1e-79 297.7 246 62.2
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 1.4e-78 297.0 249 57.8
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 1.4e-78 297.0 247 57.5
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 1.8e-78 296.6 245 58.0
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 1.8e-78 296.6 247 57.1
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 3.1e-78 295.8 239 60.7
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 4.0e-78 295.4 242 61.6
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 4.0e-78 295.4 242 61.6
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 5.3e-78 295.0 247 57.1
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 5.3e-78 295.0 248 59.7
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 6.9e-78 294.7 242 62.8
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 9.0e-78 294.3 240 60.4
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.5e-77 293.5 240 63.3
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 2.6e-77 292.7 246 58.9
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 3.4e-77 292.4 240 58.8
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 4.5e-77 292.0 245 61.2
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 5.8e-77 291.6 241 58.5
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 5.8e-77 291.6 242 59.9
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 5.8e-77 291.6 241 61.0
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 7.6e-77 291.2 241 60.6
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 1.7e-76 290.0 242 60.7
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.2e-76 289.7 252 58.7
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.2e-76 289.7 241 60.2
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 2.9e-76 289.3 246 58.9
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 3.8e-76 288.9 242 58.3
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 3.8e-76 288.9 245 56.7
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 4.9e-76 288.5 242 58.7
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 8.4e-76 287.7 248 55.2
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 1.1e-75 287.3 244 57.8
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 1.1e-75 287.3 236 59.3
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 1.4e-75 287.0 234 60.7
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 1.4e-75 287.0 227 62.6
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.9e-75 286.6 204 68.1
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.9e-75 286.6 240 60.0
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.9e-75 286.6 240 60.0
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 2.4e-75 286.2 251 60.2
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 7.1e-75 284.6 250 58.8
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 7.1e-75 284.6 203 66.0
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 9.3e-75 284.3 237 57.8
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 9.3e-75 284.3 250 58.8
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 6.0e-74 281.6 250 58.4
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.0e-74 281.6 250 58.4
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 6.0e-74 281.6 240 57.5
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 1.3e-73 280.4 201 65.7
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 3.0e-73 279.3 238 56.3
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 3.0e-73 279.3 206 64.1
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 3.9e-73 278.9 223 61.9
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 3.9e-73 278.9 243 55.6
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.9e-73 278.9 252 56.3
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 5.1e-73 278.5 204 63.7
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 8.7e-73 277.7 269 55.4
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 1.5e-72 276.9 252 56.7
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.9e-72 276.6 199 67.3
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 2.5e-72 276.2 223 61.0
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 3.3e-72 275.8 252 56.3
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 4.3e-72 275.4 238 58.4
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 7.4e-72 274.6 240 57.5
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 7.4e-72 274.6 240 57.5
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 7.4e-72 274.6 256 55.9
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 9.6e-72 274.2 252 55.2
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 9.6e-72 274.2 253 56.5
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 9.6e-72 274.2 252 55.6
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 9.6e-72 274.2 252 55.6
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 9.6e-72 274.2 252 56.0
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 1.3e-71 273.9 252 55.6
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 1.3e-71 273.9 242 56.2
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 1.6e-71 273.5 252 56.0
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 2.1e-71 273.1 252 55.2
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.8e-71 272.7 253 56.1
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 3.6e-71 272.3 242 55.4
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 3.6e-71 272.3 252 55.6
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 6.2e-71 271.6 250 55.2
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 6.2e-71 271.6 221 57.0
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 8.1e-71 271.2 203 61.6
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 1.1e-70 270.8 252 55.2
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.8e-70 270.0 251 54.2
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 1.8e-70 270.0 249 54.2
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 2.4e-70 269.6 254 53.9
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 3.1e-70 269.2 250 54.0
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 4.0e-70 268.9 252 54.0
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 4.0e-70 268.9 252 54.0
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.0e-69 266.5 255 54.5
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 2.0e-69 266.5 250 54.4
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 2.6e-69 266.2 251 54.2
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 2.6e-69 266.2 254 53.1
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 2.6e-69 266.2 254 53.1
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.4e-69 265.8 260 55.4
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 1.3e-68 263.8 238 54.2
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.2e-68 263.1 249 52.6
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 3.8e-68 262.3 253 52.6
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 3.8e-68 262.3 253 52.6
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 3.8e-68 262.3 253 52.6
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 8.4e-68 261.2 253 52.2
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 3.2e-67 259.2 260 52.7
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 5.5e-67 258.5 215 58.1
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 2.1e-66 256.5 234 55.1
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 7.9e-66 254.6 241 54.8
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 1.1e-62 244.2 195 59.0
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 3.1e-62 242.7 223 55.2
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 5.3e-62 241.9 235 55.3
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.5e-61 240.4 204 52.0
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.3e-60 237.3 246 52.4
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.9e-60 235.3 246 52.4
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 3.0e-57 226.1 239 50.6
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 1.5e-56 223.8 248 47.6
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 3.1e-54 216.1 205 49.8
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 3.8e-52 209.1 155 63.9
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 3.8e-52 209.1 153 65.4
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 3.2e-51 206.1 169 55.6
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.2e-50 204.1 178 56.2
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 6.7e-49 198.4 202 46.0
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 8.7e-49 198.0 249 40.2
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 2.2e-44 183.3 151 58.9
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 5.0e-44 182.2 151 59.6
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 2.0e-40 170.2 157 52.2
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.5e-35 152.1 170 51.2
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 1.8e-33 147.1 217 37.3
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 1.1e-32 144.4 151 51.7
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.5e-32 144.1 151 51.7
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.5e-32 144.1 151 51.7
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 3.3e-32 142.9 173 42.8
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.1e-22 111.3 177 40.1
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 1.5e-19 100.9 113 47.8
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-18 97.8 117 41.0
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.5e-11 74.3 74 48.6


User provided reference genes

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