Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 6.7e-53 210.3 99 100.0
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.6e-49 199.1 99 93.9
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 5.7e-44 180.6 100 84.0
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 4.1e-42 174.5 98 78.6
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 6.5e-40 167.2 100 78.0
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 8.6e-40 166.8 100 78.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.5e-39 166.0 100 78.0
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.9e-39 165.6 93 78.5
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.2e-38 162.9 101 78.2
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.2e-38 162.9 101 76.2
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.2e-38 162.9 101 76.2
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.6e-38 161.4 101 76.2
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 4.7e-38 161.0 103 72.8
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 4.7e-38 161.0 96 76.0
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 6.1e-38 160.6 101 77.2
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 8.0e-38 160.2 100 77.0
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.0e-37 159.8 98 78.6
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 3.0e-37 158.3 99 74.7
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 4.0e-37 157.9 100 75.0
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 4.0e-37 157.9 95 70.5
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 6.8e-37 157.1 98 72.4
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.8e-37 157.1 98 73.5
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.8e-37 157.1 98 73.5
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 6.8e-37 157.1 101 74.3
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.2e-36 156.4 103 73.8
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 1.2e-36 156.4 101 76.2
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.6e-36 155.2 87 79.3
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 3.4e-36 154.8 99 75.8
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.4e-36 154.8 97 73.2
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 4.4e-36 154.5 99 72.7
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.4e-36 154.5 96 77.1
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 4.4e-36 154.5 96 77.1
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 5.7e-36 154.1 102 74.5
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 9.8e-36 153.3 102 74.5
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 9.8e-36 153.3 101 72.3
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 9.8e-36 153.3 97 73.2
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.3e-35 152.9 98 77.6
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.3e-35 152.9 98 74.5
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 2.2e-35 152.1 104 75.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 2.8e-35 151.8 98 76.5
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 3.7e-35 151.4 101 72.3
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 3.7e-35 151.4 98 76.5
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 3.7e-35 151.4 101 74.3
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 8.3e-35 150.2 98 74.5
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 8.3e-35 150.2 98 69.4
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.1e-34 149.8 100 72.0
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.4e-34 149.4 102 72.5
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.4e-34 149.4 97 72.2
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.8e-34 149.1 98 73.5
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.8e-34 149.1 100 74.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.8e-34 149.1 99 73.7
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.8e-34 149.1 98 73.5
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.8e-34 149.1 98 72.4
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 4.1e-34 147.9 97 71.1
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 4.1e-34 147.9 99 69.7
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 7.0e-34 147.1 101 74.3
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.0e-34 147.1 101 74.3
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 9.2e-34 146.7 101 72.3
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 9.2e-34 146.7 98 71.4
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 9.2e-34 146.7 98 71.4
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.2e-33 146.4 105 73.3
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.6e-33 146.0 89 78.7
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.6e-33 146.0 101 74.3
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.6e-33 146.0 101 74.3
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.6e-33 146.0 102 73.5
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 2.0e-33 145.6 101 68.3
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 2.7e-33 145.2 102 67.6
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.7e-33 145.2 101 73.3
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 2.7e-33 145.2 100 71.0
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 3.5e-33 144.8 105 70.5
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 3.5e-33 144.8 101 72.3
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 5.9e-33 144.1 98 67.3
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.3e-32 142.9 101 71.3
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.3e-32 142.9 98 70.4
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.3e-32 142.9 102 69.6
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 2.9e-32 141.7 99 72.7
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 2.9e-32 141.7 104 71.2
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 3.8e-32 141.4 104 65.4
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 5.0e-32 141.0 99 72.7
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 5.0e-32 141.0 101 68.3
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 8.6e-32 140.2 89 75.3
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 8.6e-32 140.2 99 65.7
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 8.6e-32 140.2 99 71.7
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 8.6e-32 140.2 99 71.7
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.5e-31 139.4 101 68.3
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.5e-31 139.4 100 69.0
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.5e-31 138.7 99 64.6
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 4.3e-31 137.9 99 67.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 4.3e-31 137.9 97 70.1
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 4.3e-31 137.9 97 70.1
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 4.3e-31 137.9 99 71.7
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 5.6e-31 137.5 96 65.6
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 9.5e-31 136.7 101 67.3
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 1.2e-30 136.3 87 71.3
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 1.2e-30 136.3 99 70.7
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.2e-30 136.3 102 64.7
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.2e-30 136.3 103 65.0
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 1.6e-30 136.0 101 65.3
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 2.1e-30 135.6 109 64.2
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.7e-30 134.4 102 65.7
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 8.0e-30 133.7 101 66.3
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 8.0e-30 133.7 99 63.6
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 8.0e-30 133.7 89 71.9
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 1.0e-29 133.3 85 71.8
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.0e-29 133.3 87 74.7
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 5.2e-29 131.0 100 65.0
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 8.9e-29 130.2 91 70.3
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.2e-28 129.8 99 67.7
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 1.2e-28 129.8 99 67.7
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 2.6e-28 128.6 98 66.3
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 3.4e-28 128.3 99 64.6
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 4.4e-28 127.9 100 64.0
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 4.4e-28 127.9 90 70.0
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 5.7e-28 127.5 126 58.7
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 5.7e-28 127.5 95 66.3
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 9.8e-28 126.7 88 68.2
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.3e-27 126.3 99 63.6
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.3e-27 126.3 88 67.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.7e-27 125.9 88 70.5
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.7e-27 125.9 99 65.7
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 1.7e-27 125.9 97 67.0
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 3.7e-27 124.8 90 71.1
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 4.9e-27 124.4 87 65.5
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.1e-26 123.2 90 66.7
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 7.0e-26 120.6 76 75.0
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.0e-25 119.0 89 65.2
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.9e-24 114.8 90 68.9
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.1e-21 105.1 72 70.8
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.6e-20 102.1 75 61.3
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 4.4e-20 101.3 74 73.0
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.7e-19 99.4 50 82.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.0e-17 92.4 74 60.8
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.5e-17 91.7 74 62.2
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.3e-16 89.0 77 55.8
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 1.5e-15 86.3 72 63.9
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.5e-15 86.3 79 63.3
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.9e-15 85.9 75 54.7
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 4.3e-15 84.7 102 52.0
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 5.6e-15 84.3 75 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.6e-14 82.8 92 47.8
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.1e-14 82.4 108 48.1
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.6e-14 81.6 90 56.7
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 1.4e-13 79.7 54 64.8
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.9e-11 72.0 61 54.1
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 4.9e-11 71.2 74 51.4
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 8.3e-11 70.5 107 40.2
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 7.1e-10 67.4 93 40.9
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 9.2e-10 67.0 40 70.0
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 1.9e-07 59.3 42 61.9
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 7.3e-07 57.4 51 58.8
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 7.3e-07 57.4 51 58.8
TAR048G0001 Trochodendron aralioides HOM05D032931 ORTHO05D005600 2.1e-06 55.8 36 72.2
TAR636G2680 Trochodendron aralioides HOM05D032931 ORTHO05D005600 2.1e-06 55.8 36 72.2
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 2.8e-06 55.5 59 55.9


User provided reference genes

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