Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 0.0e+00 1302.3 848 100.0
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 9.3e-135 485.3 445 85.2
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 3.1e-98 364.0 558 54.7
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 9.1e-98 362.5 583 59.9
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.5e-97 360.1 583 59.7
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 7.7e-97 359.4 575 61.6
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.9e-96 357.5 558 63.6
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 2.9e-96 357.5 565 58.9
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 6.5e-96 356.3 567 57.8
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.5e-95 355.1 561 57.0
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 4.2e-95 353.6 561 59.7
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 5.5e-95 353.2 568 54.8
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 1.6e-94 351.7 567 51.7
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 2.1e-94 351.3 567 55.6
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.7e-94 350.1 558 55.9
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 1.8e-93 348.2 555 56.6
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.8e-93 348.2 552 51.6
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 2.3e-93 347.8 556 59.4
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 2.3e-93 347.8 567 53.1
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.2e-92 345.5 562 61.4
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.5e-92 345.1 563 60.4
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 3.3e-92 344.0 566 58.0
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.4e-92 343.6 558 54.8
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 5.7e-92 343.2 564 53.2
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 7.5e-92 342.8 552 55.1
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 9.7e-92 342.4 575 58.3
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 1.3e-91 342.0 582 54.5
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.3e-91 342.0 582 50.7
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.7e-91 341.7 568 57.2
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.7e-91 340.5 561 57.8
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 1.1e-90 339.0 552 55.1
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.8e-90 338.2 560 56.4
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.4e-90 337.8 558 59.1
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 4.1e-90 337.0 563 60.9
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 4.1e-90 337.0 560 58.0
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 1.2e-89 335.5 571 55.5
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 3.5e-89 334.0 559 51.9
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 4.5e-89 333.6 582 59.8
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 7.7e-89 332.8 564 50.7
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 8.5e-88 329.3 588 51.0
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 8.5e-88 329.3 557 60.0
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.9e-87 328.2 556 60.4
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 3.2e-87 327.4 571 54.3
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 3.2e-87 327.4 556 60.4
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 3.2e-87 327.4 571 55.2
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 5.5e-87 326.6 562 54.1
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 5.5e-87 326.6 560 53.4
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 1.2e-86 325.5 558 52.0
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 1.2e-86 325.5 552 52.2
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.6e-86 325.1 580 56.0
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 2.1e-86 324.7 571 53.1
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 4.7e-86 323.6 564 56.9
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 4.7e-86 323.6 560 56.1
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 4.7e-86 323.6 556 56.5
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 6.1e-86 323.2 564 57.3
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 6.1e-86 323.2 603 50.9
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.4e-85 322.0 568 52.3
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 4.0e-85 320.5 586 53.6
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 6.8e-85 319.7 550 54.0
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.2e-84 318.9 580 55.5
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 3.4e-84 317.4 566 49.6
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.7e-83 315.1 565 57.5
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 2.2e-83 314.7 551 54.6
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 3.7e-83 313.9 563 57.9
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.8e-83 313.5 550 48.4
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 6.3e-83 313.2 559 53.3
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.1e-82 312.4 571 49.7
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 2.4e-82 311.2 561 56.5
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 3.1e-82 310.8 577 47.5
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 7.0e-82 309.7 559 53.7
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 7.0e-82 309.7 565 51.5
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 1.6e-81 308.5 553 56.2
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.6e-81 308.5 559 56.7
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.3e-80 305.4 549 58.5
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 8.6e-80 302.8 572 55.4
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.5e-79 302.0 559 51.3
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.5e-79 302.0 571 55.5
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-79 301.6 549 55.4
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 9.5e-79 299.3 565 49.9
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 4.7e-78 297.0 566 51.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 1.0e-77 295.8 584 53.6
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.3e-77 294.7 571 55.3
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 8.8e-77 292.7 562 58.9
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 5.7e-76 290.0 561 55.6
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 9.8e-76 289.3 561 51.5
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 9.8e-76 289.3 554 53.6
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 9.8e-76 289.3 579 55.6
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.2e-75 288.1 578 48.8
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.4e-74 285.4 576 52.8
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 3.1e-74 284.3 549 58.1
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.3e-72 278.9 555 55.3
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 3.8e-72 277.3 557 53.5
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 2.5e-71 274.6 565 50.6
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.4e-69 268.9 561 57.0
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 5.7e-68 263.5 552 54.9
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 7.5e-68 263.1 567 48.5
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 4.9e-67 260.4 562 51.2
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 8.3e-67 259.6 552 45.7
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.4e-66 258.8 604 44.9
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 1.8e-66 258.5 585 49.2
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 9.2e-66 256.1 561 47.1
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.6e-65 255.4 555 50.1
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 2.3e-64 251.5 179 78.8
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 2.5e-63 248.1 571 47.5
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 4.3e-63 247.3 602 45.5
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 5.6e-63 246.9 589 48.4
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 4.7e-62 243.8 499 51.3
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 8.0e-62 243.0 180 75.0
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 6.8e-61 240.0 583 46.7
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 6.8e-61 240.0 574 44.4
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 2.6e-60 238.0 598 49.0
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.6e-57 228.8 183 72.1
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 7.8e-57 226.5 188 69.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.6e-54 218.8 444 53.6
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 6.2e-54 216.9 602 49.7
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 6.2e-54 216.9 169 73.4
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 4.0e-53 214.2 565 46.5
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.9e-51 208.0 444 50.7
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 2.3e-48 198.4 169 69.2
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 2.1e-46 191.8 543 34.8
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.8e-46 191.4 183 63.9
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 3.2e-42 177.9 423 49.4
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 3.5e-41 174.5 501 39.9
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.0e-40 171.4 504 50.2
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 9.0e-37 159.8 129 70.5
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.4e-26 125.9 293 42.0
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 3.2e-26 124.8 406 41.6
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.2e-25 122.9 244 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.6e-25 122.5 489 44.4
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 2.1e-25 122.1 107 69.2
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.3e-24 119.4 153 52.9
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 3.3e-23 114.8 115 66.1
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 6.2e-22 110.5 243 49.8
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 4.5e-20 104.4 63 81.0
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 5.8e-20 104.0 103 63.1
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-19 102.8 64 85.9
CDE02G2656 Ceratophyllum demersum HOM05D000174 ORTHO05D001526 1.7e-19 102.4 123 52.0
CDE11G0678 Ceratophyllum demersum HOM05D000174 ORTHO05D001526 1.9e-18 99.0 330 30.6
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.1e-18 97.1 121 51.2
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.6e-17 94.4 101 60.4
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 1.8e-16 92.4 84 60.7
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 3.0e-16 91.7 58 87.9
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 3.0e-16 91.7 180 38.9
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 2.4e-13 82.0 58 82.8
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.0e-12 79.0 81 58.0
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.0e-09 67.4 114 55.3
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 6.0e-09 67.4 77 58.4
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 7.9e-09 67.0 71 60.6
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 7.9e-09 67.0 71 60.6
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 2.8e-06 58.5 165 31.5


User provided reference genes

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