Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.4e-88 327.4 167 100.0
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.7e-51 205.3 172 65.7
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.2e-47 191.8 161 70.8
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 2.3e-37 159.5 173 53.2
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 4.3e-36 155.2 173 51.4
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.3e-35 153.7 173 52.6
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.7e-35 153.3 173 52.6
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.2e-35 152.9 174 51.7
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 2.2e-35 152.9 173 51.4
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.2e-35 152.9 172 52.9
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 3.7e-35 152.1 173 52.0
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 8.2e-35 151.0 174 50.0
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.8e-34 149.8 172 52.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.1e-34 149.1 173 52.0
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 3.1e-34 149.1 173 51.4
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 3.1e-34 149.1 173 53.2
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.1e-34 148.7 173 52.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 4.1e-34 148.7 176 51.7
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 5.3e-34 148.3 172 50.0
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 5.3e-34 148.3 173 51.4
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 5.3e-34 148.3 173 50.3
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 6.9e-34 147.9 173 51.4
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.9e-34 147.9 173 52.0
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 6.9e-34 147.9 173 52.0
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 6.9e-34 147.9 172 51.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 6.9e-34 147.9 175 48.6
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 9.1e-34 147.5 191 46.6
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 9.1e-34 147.5 173 52.6
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 9.1e-34 147.5 173 51.4
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.2e-33 147.1 173 50.9
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.2e-33 147.1 169 52.1
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.2e-33 147.1 169 52.1
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.2e-33 147.1 173 51.4
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.5e-33 146.7 173 51.4
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 2.0e-33 146.4 173 52.0
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 3.4e-33 145.6 173 50.3
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 5.9e-33 144.8 173 50.3
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.0e-32 144.1 149 58.4
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.0e-32 144.1 172 50.0
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.7e-32 143.3 173 48.6
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 2.9e-32 142.5 175 50.3
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 2.9e-32 142.5 173 50.3
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 3.8e-32 142.1 174 50.6
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.8e-32 142.1 171 51.5
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 3.8e-32 142.1 173 48.6
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.8e-32 142.1 171 51.5
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 5.0e-32 141.7 170 51.2
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.5e-32 141.4 138 59.4
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 6.5e-32 141.4 173 49.7
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 8.5e-32 141.0 170 50.0
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 1.1e-31 140.6 173 48.0
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.1e-31 140.6 173 50.3
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.9e-31 139.8 173 49.7
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 7.2e-31 137.9 173 47.4
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 7.2e-31 137.9 173 47.4
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 9.4e-31 137.5 173 47.4
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 9.4e-31 137.5 178 48.9
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 9.4e-31 137.5 173 44.5
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.2e-30 137.1 173 47.4
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.2e-30 137.1 173 48.6
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.6e-30 136.7 170 48.8
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.6e-30 136.7 171 49.7
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.1e-30 136.3 173 46.8
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.1e-30 136.3 169 50.3
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 2.1e-30 136.3 172 48.8
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.7e-30 136.0 173 46.8
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.6e-30 135.6 173 48.0
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 3.6e-30 135.6 173 48.0
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 3.6e-30 135.6 173 48.0
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.6e-30 135.6 173 48.0
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 4.7e-30 135.2 173 48.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 6.1e-30 134.8 179 46.9
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 6.1e-30 134.8 176 42.6
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 6.1e-30 134.8 173 48.6
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 6.1e-30 134.8 153 52.9
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 6.1e-30 134.8 173 43.4
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 7.9e-30 134.4 173 42.8
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 7.9e-30 134.4 173 46.8
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 7.9e-30 134.4 172 48.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 7.9e-30 134.4 173 46.2
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.0e-29 134.0 156 51.9
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-29 134.0 173 42.8
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.0e-29 134.0 179 46.9
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.8e-29 133.3 173 46.8
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.3e-29 132.9 174 44.8
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.3e-29 132.9 173 44.5
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.3e-29 132.9 173 47.4
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 2.3e-29 132.9 173 47.4
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 5.1e-29 131.7 173 46.2
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 8.8e-29 131.0 174 44.3
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.1e-28 130.6 172 47.7
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.1e-28 130.6 172 47.7
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.1e-28 130.6 172 48.3
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.1e-28 130.6 205 41.5
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.0e-28 129.8 174 42.5
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.0e-28 129.8 172 47.1
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.3e-28 129.0 171 48.0
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.3e-28 129.0 171 48.0
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 3.3e-28 129.0 173 44.5
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 9.7e-28 127.5 168 48.2
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 9.7e-28 127.5 168 48.2
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.7e-27 126.7 169 45.6
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.2e-27 126.3 168 47.6
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.8e-27 125.9 173 49.7
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 4.8e-27 125.2 168 48.2
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.8e-27 125.2 168 48.2
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.8e-27 125.2 188 43.6
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 8.2e-27 124.4 69 88.4
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.4e-26 123.6 166 46.4
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.4e-26 123.6 175 45.7
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.8e-26 123.2 174 45.4
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 5.3e-26 121.7 171 44.4
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.2e-25 120.6 157 50.3
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.2e-25 120.6 68 86.8
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 3.4e-25 119.0 200 42.0
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 5.9e-25 118.2 170 45.3
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 7.7e-25 117.9 171 43.9
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.9e-24 115.9 163 46.6
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 5.0e-24 115.2 172 44.2
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 8.5e-24 114.4 177 41.8
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.9e-23 113.2 68 80.9
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 2.5e-23 112.8 68 79.4
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.2e-23 112.5 120 50.0
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.2e-22 110.5 180 43.3
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.6e-22 110.2 146 49.3
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.1e-22 109.8 172 43.6
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.6e-22 109.0 67 77.6
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.1e-22 108.2 145 48.3
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.8e-21 106.7 172 41.3
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.8e-21 106.7 172 42.4
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 3.0e-21 105.9 148 44.6
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 3.7e-19 99.0 147 40.8
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 6.3e-19 98.2 67 73.1
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.1e-18 97.4 132 43.2
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 5.3e-18 95.1 169 39.6
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 7.0e-18 94.7 148 42.6
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.2e-17 94.0 124 49.2
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.0e-13 80.9 162 34.0
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.8e-13 80.1 140 39.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 2.2e-11 73.2 49 71.4
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 4.8e-11 72.0 55 69.1
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.6e-09 67.0 123 39.8
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 2.9e-08 62.8 42 73.8
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.2e-07 59.3 144 34.0


User provided reference genes

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