Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.0e-198 694.5 339 100.0
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 5.8e-128 461.5 291 73.5
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 2.9e-127 459.1 315 69.2
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.1e-126 457.2 295 72.5
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 5.4e-126 454.9 294 72.4
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 7.8e-125 451.1 293 71.3
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.0e-124 450.7 293 72.0
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.7e-124 449.9 328 65.9
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.3e-124 449.5 291 72.5
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 3.0e-124 449.1 330 66.7
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 5.0e-124 448.4 326 66.3
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 5.0e-124 448.4 336 63.7
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 5.0e-124 448.4 336 63.7
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.2e-122 443.7 325 66.8
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 2.8e-122 442.6 287 71.4
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 3.6e-122 442.2 281 73.7
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 4.7e-122 441.8 297 70.4
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 4.7e-122 441.8 328 66.5
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 4.7e-122 441.8 295 69.5
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 8.0e-122 441.0 294 69.4
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.4e-121 440.3 337 64.4
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 5.2e-121 438.3 289 70.6
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.2e-121 438.3 291 70.4
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 8.9e-121 437.6 282 70.9
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.0e-120 436.4 313 66.1
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 2.6e-120 436.0 325 66.5
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 3.4e-120 435.6 339 64.9
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 2.2e-119 433.0 295 70.2
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.9e-119 432.6 304 67.4
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 3.7e-119 432.2 348 62.6
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 3.7e-119 432.2 294 69.0
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 4.9e-119 431.8 304 65.8
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.1e-118 430.6 280 70.7
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.9e-118 429.9 297 67.3
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 5.4e-118 428.3 325 64.0
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 7.0e-118 427.9 292 68.5
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 1.2e-117 427.2 348 61.8
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.6e-117 426.8 293 70.3
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 2.7e-117 426.0 332 63.6
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 3.5e-117 425.6 287 69.0
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 3.5e-117 425.6 292 68.2
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 5.0e-116 421.8 286 69.6
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.1e-115 420.6 295 67.8
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.5e-115 420.2 272 69.5
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.5e-115 420.2 296 67.2
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.3e-115 419.1 287 67.9
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 7.3e-115 417.9 291 67.4
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 9.5e-115 417.5 286 68.2
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 2.8e-114 416.0 294 67.0
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.1e-113 414.1 312 65.1
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 2.3e-113 412.9 268 73.1
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.0e-113 412.1 287 67.6
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 5.2e-113 411.8 283 67.8
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.8e-113 411.4 322 63.0
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.5e-112 410.2 323 61.9
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 2.0e-112 409.8 280 68.6
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 4.4e-112 408.7 295 65.1
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 5.8e-112 408.3 316 63.9
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 7.5e-112 407.9 262 71.0
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 7.5e-112 407.9 294 66.0
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.9e-112 407.5 281 68.7
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.9e-112 407.5 293 66.9
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 1.7e-111 406.8 295 66.1
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 2.9e-111 406.0 316 62.3
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.7e-111 405.6 285 66.0
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 3.7e-111 405.6 323 60.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 4.9e-111 405.2 257 71.2
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 6.4e-111 404.8 313 64.2
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 6.4e-111 404.8 292 64.7
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.1e-110 404.1 334 60.2
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.9e-110 403.3 303 64.4
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 7.1e-110 401.4 337 59.1
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 7.1e-110 401.4 263 70.7
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 9.2e-110 401.0 308 63.6
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.6e-109 400.2 295 63.7
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 2.1e-109 399.8 312 62.2
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 7.8e-109 397.9 292 65.8
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 1.0e-108 397.5 283 65.7
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.3e-108 397.1 312 63.1
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.3e-108 397.1 317 61.8
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 2.3e-108 396.4 309 63.4
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 2.5e-107 392.9 281 67.3
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.3e-107 392.5 284 64.1
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 3.3e-107 392.5 296 62.5
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 7.3e-107 391.3 268 66.0
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 9.5e-107 391.0 292 64.0
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 2.1e-106 389.8 297 63.6
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 4.7e-106 388.7 281 65.1
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.4e-105 387.1 270 67.4
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 5.2e-105 385.2 291 62.9
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 5.8e-104 381.7 297 61.3
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 1.7e-103 380.2 333 57.7
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 3.8e-103 379.0 302 61.6
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 4.9e-103 378.6 258 67.4
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.1e-102 377.5 271 66.4
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.9e-102 376.7 271 66.1
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 3.2e-102 375.9 300 61.7
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 7.1e-102 374.8 283 62.9
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.6e-101 373.6 316 59.5
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 4.6e-101 372.1 327 55.4
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.1e-99 367.5 330 56.4
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.2e-98 364.0 323 57.6
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 1.6e-98 363.6 323 57.3
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 3.6e-98 362.5 334 55.7
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.4e-97 360.5 229 70.3
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 3.1e-97 359.4 346 53.8
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 5.3e-97 358.6 227 71.8
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 5.3e-97 358.6 319 57.7
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.2e-96 357.5 292 59.2
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 4.9e-95 352.1 327 55.4
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 1.1e-94 350.9 328 55.8
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 7.1e-94 348.2 408 48.0
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 4.6e-93 345.5 281 60.1
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.3e-92 344.0 334 52.7
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 4.3e-91 339.0 261 62.5
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 4.0e-89 332.4 323 54.5
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.0e-88 330.1 258 58.9
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 2.6e-88 329.7 307 54.7
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 4.5e-88 328.9 316 52.5
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 9.9e-88 327.8 310 53.9
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.1e-85 320.1 293 57.0
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 2.5e-83 313.2 283 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 4.8e-82 308.9 279 52.3
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 7.6e-80 301.6 295 51.9
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 8.4e-79 298.1 353 45.0
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 7.1e-78 295.0 241 61.0
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 1.3e-76 290.8 328 47.9
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 5.1e-76 288.9 328 47.6
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 2.5e-75 286.6 184 70.7
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 3.1e-73 279.6 260 52.3
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.0e-73 279.3 335 47.2
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.0e-73 278.1 302 49.7
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 2.2e-71 273.5 291 48.1
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.1e-70 271.2 311 48.6
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.4e-70 270.8 217 63.1
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.2e-69 267.7 327 45.6
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 4.6e-69 265.8 308 48.1
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 7.9e-69 265.0 177 70.1
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.7e-66 256.1 267 49.8
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.7e-63 247.3 297 46.5
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 7.9e-61 238.4 121 90.9
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 7.9e-61 238.4 164 67.1
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 7.9e-61 238.4 173 67.1
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 1.4e-60 237.7 169 67.5
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.1e-59 234.6 173 64.7
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 2.0e-59 233.8 172 66.3
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 9.7e-59 231.5 184 62.0
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 2.2e-58 230.3 548 31.0
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 1.4e-57 227.6 185 62.2
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.4e-57 227.6 179 62.0
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.1e-57 224.9 186 58.1
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.2e-56 224.6 186 58.1
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 2.9e-55 219.9 173 60.7
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 6.5e-55 218.8 234 50.0
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.9e-54 217.2 241 44.0
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 7.9e-53 211.8 110 89.1
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 3.7e-50 203.0 344 33.7
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 7.0e-49 198.7 293 39.9
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 4.2e-46 189.5 184 55.4
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 3.0e-44 183.3 113 69.9
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.4e-41 174.5 116 65.5
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 2.6e-40 170.2 136 58.8
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 7.7e-40 168.7 129 62.8
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 1.0e-36 158.3 108 64.8
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 6.3e-34 149.1 103 65.0
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.0e-33 145.6 184 45.7
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.7e-32 143.7 97 67.0
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.7e-32 142.1 96 66.7
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 2.9e-31 140.2 138 53.6
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 9.4e-30 135.2 104 62.5
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.7e-26 124.4 88 63.6
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.9e-23 113.6 91 59.3
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.2e-18 97.4 60 68.3
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 8.3e-18 95.5 72 58.3
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 8.6e-15 85.5 51 70.6
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 4.3e-14 83.2 56 66.1
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 4.7e-13 79.7 51 70.6
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 8.3e-10 68.9 47 63.8
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 9.2e-09 65.5 45 62.2
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.3e-07 61.6 37 70.3
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 1.9e-06 57.8 55 52.7


User provided reference genes

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