Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.5e-99 365.5 194 100.0
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.9e-67 259.6 191 68.1
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 6.8e-65 251.1 192 66.1
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.4e-64 248.8 190 66.8
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 8.3e-63 244.2 186 65.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 2.4e-62 242.7 175 70.3
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 5.4e-62 241.5 182 67.0
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.6e-61 240.0 180 66.1
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.0e-61 239.6 194 63.9
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 3.5e-61 238.8 187 65.2
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.3e-60 236.9 194 63.4
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.7e-60 236.5 176 67.6
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 8.5e-60 234.2 196 63.8
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.5e-59 233.4 176 67.6
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.9e-59 233.0 183 66.1
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.2e-59 232.3 185 67.6
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 5.5e-59 231.5 182 66.5
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 7.2e-59 231.1 176 68.2
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 9.4e-59 230.7 179 64.8
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.2e-58 230.3 196 58.7
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.7e-58 229.2 189 61.9
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 2.7e-58 229.2 185 64.3
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 3.6e-58 228.8 177 67.2
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 4.7e-58 228.4 185 64.9
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 6.1e-58 228.0 172 66.3
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 6.1e-58 228.0 168 69.6
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 8.0e-58 227.6 186 60.8
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.0e-57 227.3 189 63.0
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.4e-57 226.9 179 63.7
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.3e-57 226.1 190 63.2
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 2.3e-57 226.1 189 59.8
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.3e-57 226.1 188 63.3
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 4.0e-57 225.3 187 63.6
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 4.0e-57 225.3 192 61.5
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.0e-57 225.3 200 60.0
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 5.2e-57 224.9 172 66.3
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 5.2e-57 224.9 184 64.1
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 8.8e-57 224.2 189 61.9
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 8.8e-57 224.2 166 68.7
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-56 223.8 164 68.9
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.2e-56 223.8 189 64.6
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.2e-56 223.8 173 65.3
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.5e-56 223.4 192 63.5
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.5e-56 223.4 183 62.3
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.0e-56 223.0 170 67.6
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 2.0e-56 223.0 172 66.3
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 2.6e-56 222.6 190 61.1
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 3.4e-56 222.2 177 63.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 3.4e-56 222.2 189 59.3
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 3.4e-56 222.2 168 66.1
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 4.4e-56 221.9 185 62.7
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 4.4e-56 221.9 184 58.7
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 4.4e-56 221.9 188 60.1
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 5.7e-56 221.5 170 65.9
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 7.5e-56 221.1 198 58.6
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 9.8e-56 220.7 175 64.0
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.3e-55 220.3 183 61.7
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.2e-55 219.5 183 61.2
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 2.8e-55 219.2 174 62.6
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 2.8e-55 219.2 183 61.7
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 3.7e-55 218.8 185 62.2
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 6.3e-55 218.0 183 63.9
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 6.3e-55 218.0 185 60.5
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 8.3e-55 217.6 196 60.7
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 8.3e-55 217.6 196 60.7
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.1e-54 217.2 174 63.8
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.1e-54 217.2 174 62.1
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 1.4e-54 216.9 194 61.3
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.4e-54 216.9 194 61.3
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.8e-54 216.5 189 59.8
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.8e-54 216.5 199 54.8
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 3.1e-54 215.7 182 61.5
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.1e-54 215.7 216 56.9
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 3.1e-54 215.7 188 59.6
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 4.1e-54 215.3 187 59.9
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.4e-54 214.9 161 65.2
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 7.0e-54 214.5 186 59.1
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 7.0e-54 214.5 186 60.2
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 9.2e-54 214.2 186 58.1
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 9.2e-54 214.2 189 61.9
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 9.2e-54 214.2 189 61.9
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.2e-53 213.8 186 60.2
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.2e-53 213.8 168 67.3
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.0e-53 213.0 168 64.3
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 2.0e-53 213.0 189 58.7
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 4.5e-53 211.8 173 59.0
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 5.9e-53 211.5 161 65.8
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.0e-52 210.7 169 60.9
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 1.3e-52 210.3 173 64.2
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.3e-52 210.3 180 61.1
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 2.3e-52 209.5 177 62.7
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.3e-52 209.5 169 60.9
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 5.0e-52 208.4 199 55.8
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 8.6e-52 207.6 181 58.6
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 8.6e-52 207.6 177 61.6
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.1e-51 207.2 182 57.7
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.1e-51 207.2 172 60.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.1e-51 207.2 150 68.7
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.5e-51 206.8 165 63.0
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.5e-51 206.1 177 61.0
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.6e-50 203.4 176 59.7
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.1e-50 203.0 182 61.5
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 2.8e-50 202.6 170 62.4
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 2.8e-50 202.6 180 61.1
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.6e-50 202.2 171 62.0
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.6e-50 202.2 171 62.0
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 8.0e-50 201.1 184 58.7
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 5.2e-49 198.4 162 61.7
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.2e-48 197.2 162 61.1
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 2.6e-48 196.1 170 58.8
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 5.7e-48 194.9 227 51.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 9.8e-48 194.1 174 58.0
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 9.8e-48 194.1 169 61.5
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.7e-47 193.4 186 55.4
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.2e-47 193.0 142 67.6
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.4e-46 190.3 178 57.3
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.4e-46 190.3 181 54.7
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.4e-46 189.5 176 56.2
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.2e-46 189.1 163 60.7
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.0e-45 186.4 211 50.2
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 5.9e-45 184.9 182 55.5
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 2.3e-44 183.0 189 54.5
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.6e-42 175.6 163 54.6
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.5e-40 170.2 163 54.0
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 2.0e-40 169.9 171 50.9
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 4.9e-39 165.2 156 57.1
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.4e-38 162.9 218 45.9
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 2.7e-37 159.5 166 53.6
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.7e-36 156.8 102 72.5
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 4.3e-35 152.1 170 47.6
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 5.6e-35 151.8 147 55.8
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 9.5e-35 151.0 170 48.2
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.6e-34 149.1 168 46.4
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-30 137.5 125 56.8
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 3.5e-29 132.5 139 48.9
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 3.5e-29 132.5 122 55.7
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 4.6e-29 132.1 101 66.3
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 8.6e-28 127.9 103 60.2
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 8.6e-28 127.9 93 64.5
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.5e-27 127.1 100 68.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.6e-27 125.2 82 70.7
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 2.0e-24 116.7 98 59.2
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 3.4e-24 115.9 99 64.6
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.4e-22 110.5 92 62.0
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 9.6e-19 97.8 84 59.5
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.7e-18 95.5 79 62.0
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 2.7e-13 79.7 68 61.8
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.5e-13 79.3 139 36.7
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 6.0e-13 78.6 128 35.9
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 5.1e-12 75.5 74 54.1
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.8e-09 67.0 49 67.3
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 1.5e-08 63.9 62 54.8
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.5e-08 63.9 96 41.7
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.4e-06 57.4 45 60.0
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 7.1e-06 55.1 40 70.0


User provided reference genes

Program Settings