Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 5.9e-64 247.7 153 100.0
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.8e-52 209.5 159 88.7
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 3.0e-31 139.0 161 64.6
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 5.2e-28 128.3 141 67.4
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.0e-27 126.3 132 71.2
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.9e-26 122.5 119 73.9
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.7e-26 122.1 119 73.9
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 4.9e-26 121.7 100 84.0
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.4e-25 120.2 108 75.9
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 3.2e-25 119.0 113 75.2
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.2e-25 119.0 141 65.2
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.4e-25 118.2 98 81.6
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.2e-24 117.1 106 76.4
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.6e-24 116.7 106 79.2
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.6e-24 116.7 104 78.8
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.6e-24 116.7 104 78.8
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 2.7e-24 115.9 96 80.2
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 2.7e-24 115.9 96 80.2
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 3.5e-24 115.5 145 55.2
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 4.6e-24 115.2 104 77.9
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 7.8e-24 114.4 100 81.0
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.7e-23 113.2 108 76.9
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.7e-23 113.2 100 78.0
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 2.3e-23 112.8 103 76.7
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 3.9e-23 112.1 100 78.0
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 5.0e-23 111.7 101 78.2
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 8.6e-23 110.9 115 72.2
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 8.6e-23 110.9 100 78.0
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 8.6e-23 110.9 100 75.0
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.5e-22 110.2 99 76.8
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 3.3e-22 109.0 103 76.7
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 4.3e-22 108.6 107 77.6
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 7.3e-22 107.8 156 58.3
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.1e-21 106.3 142 59.9
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 4.7e-21 105.1 105 75.2
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 4.7e-21 105.1 145 60.7
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 8.1e-21 104.4 100 75.0
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.4e-20 103.6 136 61.0
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 1.8e-20 103.2 101 76.2
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.8e-20 103.2 130 63.8
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 1.8e-20 103.2 98 77.6
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.3e-20 102.8 105 70.5
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.3e-20 102.8 105 70.5
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.3e-20 102.8 105 70.5
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 3.1e-20 102.4 104 74.0
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 4.0e-20 102.1 105 70.5
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 4.0e-20 102.1 130 63.8
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 4.0e-20 102.1 108 65.7
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 8.9e-20 100.9 105 69.5
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 8.9e-20 100.9 111 67.6
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 1.2e-19 100.5 103 70.9
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 1.2e-19 100.5 138 63.0
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.5e-19 100.1 137 61.3
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.5e-19 100.1 116 66.4
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.6e-19 99.4 100 72.0
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 2.6e-19 99.4 150 58.0
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 3.4e-19 99.0 106 66.0
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.4e-19 99.0 111 66.7
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 4.4e-19 98.6 105 69.5
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 5.8e-19 98.2 104 68.3
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 5.8e-19 98.2 134 61.2
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 7.5e-19 97.8 59 84.7
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 9.8e-19 97.4 107 64.5
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.7e-18 96.7 108 70.4
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 2.2e-18 96.3 141 58.2
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 3.7e-18 95.5 103 70.9
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.7e-18 95.5 103 70.9
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 3.7e-18 95.5 190 47.9
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 4.9e-18 95.1 145 57.9
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.4e-17 93.6 88 77.3
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 2.4e-17 92.8 125 60.0
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 3.2e-17 92.4 130 64.6
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 3.2e-17 92.4 107 67.3
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 5.4e-17 91.7 130 61.5
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 7.1e-17 91.3 107 60.7
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 7.1e-17 91.3 157 48.4
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 7.1e-17 91.3 114 58.8
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.2e-16 90.5 100 73.0
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.2e-16 90.5 108 67.6
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.6e-16 90.1 111 59.5
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.6e-16 90.1 107 60.7
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 2.1e-16 89.7 105 69.5
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 2.1e-16 89.7 105 69.5
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 2.1e-16 89.7 119 58.0
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.7e-16 89.4 88 69.3
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 3.5e-16 89.0 107 60.7
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 4.6e-16 88.6 123 64.2
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 6.0e-16 88.2 105 68.6
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 6.0e-16 88.2 112 65.2
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 7.8e-16 87.8 136 61.8
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 7.8e-16 87.8 136 61.8
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 7.8e-16 87.8 105 68.6
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 7.8e-16 87.8 135 62.2
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 1.3e-15 87.0 103 68.9
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.3e-15 86.3 107 59.8
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.0e-15 85.9 114 56.1
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 3.9e-15 85.5 146 47.9
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 2.5e-14 82.8 104 62.5
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 5.6e-14 81.6 120 51.7
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.6e-13 80.1 102 68.6
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 2.8e-13 79.3 136 57.4
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 3.6e-13 79.0 136 49.3
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 3.6e-13 79.0 106 59.4
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 8.1e-13 77.8 115 57.4
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.1e-12 77.4 120 53.3
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.0e-12 75.5 117 53.0
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.5e-11 73.6 107 54.2
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.6e-11 72.8 98 59.2
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 4.4e-11 72.0 90 58.9
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 7.6e-11 71.2 84 60.7
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 7.6e-11 71.2 98 57.1
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 7.6e-11 71.2 98 57.1
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 9.9e-11 70.9 84 59.5
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.3e-10 70.5 84 67.9
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.3e-10 70.5 96 55.2
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.9e-10 69.3 84 67.9
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.9e-10 69.3 115 55.7
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.8e-10 68.9 125 51.2
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 4.9e-10 68.6 84 58.3
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 4.9e-10 68.6 84 58.3
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 4.9e-10 68.6 84 58.3
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 4.9e-10 68.6 84 58.3
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.9e-10 68.6 123 54.5
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 6.4e-10 68.2 96 54.2
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.9e-09 66.6 68 69.1
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.4e-09 66.2 120 52.5
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 5.4e-09 65.1 100 51.0
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 7.1e-09 64.7 84 65.5
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 7.1e-09 64.7 117 49.6
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 9.2e-09 64.3 84 66.7
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 2.1e-08 63.2 99 53.5
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.0e-08 61.6 68 61.8
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 7.8e-08 61.2 150 41.3
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 1.0e-07 60.8 100 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 1.0e-07 60.8 113 53.1
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.0e-07 60.8 103 57.3
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.0e-07 60.8 72 58.3
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.0e-07 60.8 127 44.9
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.0e-07 60.8 120 47.5
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.7e-07 60.1 114 48.2
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 3.9e-07 58.9 90 54.4
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 5.1e-07 58.5 108 49.1
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 6.6e-07 58.2 121 50.4
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 8.6e-07 57.8 99 51.5
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.1e-06 57.4 92 48.9
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.3e-06 55.8 87 42.5
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 7.3e-06 54.7 143 46.9


User provided reference genes

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