Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 2280.4 1174 100.0
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1600.5 1211 69.3
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1532.7 1213 66.1
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1515.7 1210 65.8
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1502.6 1211 64.7
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1501.5 1205 65.1
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1500.3 1167 67.4
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1494.2 1209 64.7
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1491.1 1211 64.5
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1490.7 1208 63.9
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1483.4 1209 64.4
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1482.6 1210 64.1
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1480.7 1207 63.8
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1475.3 1205 64.1
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1467.6 1213 63.1
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1464.9 1212 62.8
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1460.3 1204 63.5
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1452.2 1214 62.8
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1451.8 1209 63.1
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1450.6 1203 64.1
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1449.1 1210 63.5
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1448.3 1207 62.6
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1448.0 1204 62.9
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1446.4 1212 61.5
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1444.9 1209 62.2
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1443.3 1205 62.2
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1442.2 1204 63.5
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1438.7 1215 62.6
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1438.7 1209 62.8
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1435.6 1212 62.0
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1432.5 1182 62.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1431.8 1204 62.4
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1431.4 1202 62.1
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1428.7 1214 62.3
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1426.8 1202 61.8
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1426.4 1202 62.1
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1425.2 1211 61.8
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1424.8 1185 62.7
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1424.1 1208 62.1
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1424.1 1207 60.5
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1423.7 1208 61.2
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1423.7 1210 61.5
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1423.3 1219 61.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1422.1 1202 61.8
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1419.1 1212 61.1
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1418.3 1187 61.8
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1415.6 1202 61.5
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1411.7 1204 61.3
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1409.4 1207 61.9
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1408.3 1210 60.7
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1406.7 1211 60.8
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1406.0 1204 60.8
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1405.2 1210 61.0
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1405.2 1174 62.7
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1401.0 1204 61.1
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1394.4 1207 60.1
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1389.8 1213 60.8
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1387.1 1206 60.3
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1370.5 1211 59.0
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1370.5 1208 60.6
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1369.4 1215 59.9
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1368.6 1207 60.9
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1367.8 1201 59.4
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1365.1 1213 60.3
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1364.4 1204 59.5
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1363.6 1203 59.2
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1362.4 1206 59.1
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1361.3 1206 59.3
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1360.1 1207 60.0
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1360.1 1184 59.5
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1359.0 1206 59.1
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1358.2 1202 60.0
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1357.8 1206 59.2
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1356.3 1204 59.2
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1354.0 1204 59.2
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1345.9 1173 61.0
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1339.7 1121 62.2
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1338.2 1208 57.1
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1335.9 1206 58.0
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1335.5 1196 58.4
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1328.5 1217 57.8
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1321.2 1199 57.6
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1320.8 1199 57.8
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1318.1 1180 58.6
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1310.4 1208 57.3
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1308.9 1207 58.2
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1305.8 1201 59.6
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1303.9 1203 57.4
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1302.7 1177 58.9
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1302.3 1182 58.0
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1295.4 1261 56.0
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1293.9 1199 57.0
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1278.1 1206 57.2
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1234.2 1120 58.2
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1198.0 1024 60.6
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1189.1 993 62.5
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1188.7 1299 52.2
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1180.2 1206 54.4
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1167.1 1038 59.8
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1156.7 1141 55.0
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1134.4 1221 51.4
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 1.9e-287 993.0 960 56.1
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 9.1e-282 974.2 886 57.6
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 6.6e-272 941.4 811 60.3
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 4.6e-265 918.7 834 59.2
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.5e-255 886.3 1222 41.8
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.8e-254 882.9 1224 42.3
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.2e-252 877.5 1249 42.4
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 5.4e-250 868.6 1154 46.4
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 9.3e-234 814.7 1188 40.0
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 3.5e-217 759.6 1187 41.5
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 3.8e-211 739.6 792 51.8
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.8e-208 730.7 1149 41.3
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 5.7e-207 725.7 1162 40.6
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.5e-204 717.6 1162 40.4
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 3.8e-203 713.0 1208 36.7
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 2.6e-196 690.3 638 57.1
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.3e-191 673.3 573 62.7
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.3e-179 634.8 542 62.5
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 3.2e-178 630.2 1082 39.6
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.3e-166 589.3 627 52.0
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.9e-149 534.6 420 64.8
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 5.4e-149 533.1 604 51.8
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 3.7e-142 510.4 503 56.7
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.4e-125 454.5 485 51.5
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 7.1e-109 399.8 321 65.4
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 5.8e-95 353.6 296 64.2
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 6.1e-76 290.4 269 57.6
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 5.9e-71 273.9 1342 24.2
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 3.0e-67 261.5 212 61.8
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 7.5e-66 256.9 211 63.5
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 1.9e-61 242.3 195 66.7
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 1.0e-51 209.9 216 51.4
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 9.8e-50 203.4 442 30.8
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.3e-46 193.0 483 29.4
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.9e-37 162.5 109 71.6
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.0e-34 152.5 782 23.0
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.4e-24 119.8 95 63.2
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 8.1e-20 104.0 73 72.6
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 5.8e-18 97.8 213 32.9
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 3.0e-14 85.5 74 59.5
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-13 83.2 79 53.2
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 2.8e-12 79.0 63 63.5
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 1.1e-11 77.0 319 24.5
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 4.0e-11 75.1 69 55.1
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 5.2e-11 74.7 76 47.4
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 2.0e-10 72.8 64 62.5
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 2.0e-10 72.8 48 77.1
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 2.0e-10 72.8 48 77.1
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 7.6e-10 70.9 74 51.4
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.9e-09 68.2 62 59.7
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 5.4e-08 64.7 62 53.2
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 5.4e-08 64.7 62 53.2
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.3e-06 60.1 37 73.0


User provided reference genes

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