Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 3309.2 1654 100.0
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 1838.5 1678 57.8
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1831.6 1677 56.2
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 1830.8 1664 57.2
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 1788.1 1670 55.7
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1758.8 1680 54.6
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 1728.0 1673 54.0
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 1721.1 1670 53.8
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 1703.3 1679 54.0
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 1700.3 1671 53.5
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 1693.3 1664 53.9
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 1689.9 1662 53.7
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 1684.1 1673 53.8
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 1658.3 1655 52.6
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 1652.5 1672 51.8
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 1648.3 1678 52.1
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1648.3 1698 51.8
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 1630.5 1663 52.1
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 1629.0 1688 51.5
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 1628.6 1668 52.0
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1626.7 1663 52.0
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1622.8 1690 51.2
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 1621.3 1672 52.4
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 1621.3 1699 51.3
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 1620.1 1685 51.8
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 1614.7 1662 51.0
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1602.4 1703 51.0
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 1599.7 1674 50.6
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1585.1 1664 51.3
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 1583.9 1664 50.7
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1582.8 1699 50.6
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 1581.2 1932 46.6
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 1580.8 1672 49.9
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 1573.9 1703 50.3
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 1573.5 1671 49.5
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 1572.4 1687 50.1
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1570.8 1676 50.4
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 1568.5 1697 50.3
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 1563.5 1668 49.8
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 1562.4 1675 49.9
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 1562.4 1665 50.7
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 1555.4 1682 49.8
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1547.7 1662 49.8
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 1541.9 1667 49.6
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 1536.5 1748 48.6
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1535.8 1679 50.1
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1531.5 1690 48.9
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 1528.1 1667 49.8
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1513.8 1655 49.3
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 1513.0 1648 49.5
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1511.9 1696 49.1
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 1510.0 1644 49.8
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 1505.7 1676 48.0
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 1505.0 1704 48.3
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 1497.3 1662 49.9
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 1484.5 1675 47.3
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1480.7 1674 47.4
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1480.7 1680 48.2
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 1464.1 1679 46.9
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1463.7 1665 47.6
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1457.6 1680 46.9
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1455.3 1678 46.7
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 1455.3 1678 46.7
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1454.5 1698 47.9
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1449.9 1676 47.3
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1449.1 1663 48.5
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 1446.0 1370 55.3
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 1445.6 1673 48.1
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1436.4 1680 48.0
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 1434.9 1664 46.6
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 1431.0 1706 45.5
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1429.8 1679 47.8
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1427.9 1455 51.3
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1416.0 1289 57.2
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1413.7 1679 45.9
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1397.1 1682 47.1
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 1391.7 1419 52.2
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1381.3 1348 54.5
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1355.1 1376 52.8
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1327.0 1345 52.3
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1322.8 1482 47.4
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1298.9 1575 47.2
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1249.6 1215 54.2
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1183.7 1346 47.8
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1171.8 1205 51.7
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1106.3 1365 44.2
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1095.1 1746 38.1
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 3.8e-310 1068.9 1437 43.6
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 2.3e-307 1059.7 1267 46.3
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 1.3e-294 1017.3 1734 36.7
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 3.0e-294 1016.1 1306 44.4
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 1.2e-279 967.6 1579 37.4
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.3e-238 830.5 1094 43.4
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 2.1e-215 754.2 594 63.8
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.8e-204 717.2 1004 42.4
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.6e-199 701.4 644 57.3
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.1e-199 701.0 892 45.2
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 4.7e-159 567.0 714 45.7
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 8.7e-129 466.5 461 54.4
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 6.7e-113 413.7 458 46.5
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 3.8e-100 371.3 551 39.4
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.2e-92 345.5 337 57.3
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.3e-89 335.5 458 42.4
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 3.3e-75 288.5 218 65.1
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 1.9e-67 262.7 224 60.7
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.5e-56 226.5 303 43.9
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 4.4e-56 224.9 330 39.4
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 1.3e-55 223.4 325 40.0
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 8.3e-55 220.7 343 38.2
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.0e-52 213.8 203 56.2
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 1.3e-52 213.4 153 68.0
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 1.7e-52 213.0 152 68.4
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.1e-50 206.1 207 55.1
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 5.2e-49 201.4 839 24.4
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.2e-48 200.3 228 51.3
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 2.3e-44 186.0 462 30.3
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 5.1e-44 184.9 153 62.1
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-40 173.7 620 25.5
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 3.2e-38 165.6 291 36.8
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 5.1e-36 158.3 105 74.3
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.1e-29 136.3 174 47.7
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 8.7e-28 131.0 121 53.7
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 9.6e-27 127.5 335 31.6
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 2.0e-24 119.8 116 53.4
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 2.2e-23 116.3 153 43.8
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.1e-21 109.8 73 68.5
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 4.3e-19 102.1 64 78.1
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 2.1e-13 83.2 260 26.5
CBR_g18614 Chara braunii HOM05D002653 ORTHO05D002623 5.1e-12 78.6 427 22.7
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 8.7e-12 77.8 119 40.3
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 1.3e-10 73.9 469 20.0
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 4.8e-10 72.0 107 38.3
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 6.3e-10 71.6 62 53.2
Sp1g35040 Schrenkiella parvula HOM05D001092 ORTHO05D000923 4.1e-09 68.9 517 22.2
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 2.2e-07 63.2 42 71.4
MELO3C006741.2 Cucumis melo HOM05D001092 ORTHO05D000923 1.1e-06 60.8 514 21.0


User provided reference genes

Program Settings