Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0283 Ceratophyllum demersum HOM05D002039 ORTHO05D005369 3.1e-75 285.4 184 100.0
TAR626G0341 Trochodendron aralioides HOM05D002039 ORTHO05D005369 9.0e-35 151.0 109 67.9
CiPaw.09G062500 Carya illinoinensis HOM05D002039 ORTHO05D005369 5.8e-34 148.3 109 65.1
Eucgr.D00605 Eucalyptus grandis HOM05D002039 ORTHO05D005369 1.0e-33 147.5 183 63.4
TAR624G0590 Trochodendron aralioides HOM05D002039 ORTHO05D005369 2.2e-33 146.4 111 66.7
MBI02_g32628_MAGBIO Magnolia biondii HOM05D002039 ORTHO05D005369 2.9e-33 146.0 109 63.3
Peaxi162Scf00461g01116 Petunia axillaris HOM05D002039 ORTHO05D005369 3.8e-33 145.6 111 64.0
Dinv17339 Davidia involucrata HOM05D002039 ORTHO05D005369 6.5e-33 144.8 109 65.1
TAR624G0166 Trochodendron aralioides HOM05D002039 ORTHO05D005369 6.5e-33 144.8 111 65.8
Nn1g06448 Nelumbo nucifera HOM05D002039 ORTHO05D005369 8.4e-33 144.4 110 65.5
TPR.G16528 Trifolium pratense HOM05D002039 ORTHO05D005369 8.4e-33 144.4 109 64.2
ATR0763G230 Amborella trichopoda HOM05D002039 ORTHO05D005369 1.1e-32 144.1 109 64.2
Oeu029368.1 Olea europaea HOM05D002039 ORTHO05D005369 1.9e-32 143.3 175 61.1
Haze_06398 Corylus avellana HOM05D002039 ORTHO05D005369 2.5e-32 142.9 109 63.3
SalBow8G0156 Salvia bowleyana HOM05D002039 ORTHO05D005369 2.5e-32 142.9 173 67.6
CANSAT35G1633 Cannabis sativa HOM05D002039 ORTHO05D005369 3.2e-32 142.5 109 66.1
Ca_00353_v3 Cicer arietinum L. HOM05D002039 ORTHO05D005369 3.2e-32 142.5 109 63.3
QL05p042020 Quercus lobata HOM05D002039 ORTHO05D005369 3.2e-32 142.5 109 63.3
Nn1g04176 Nelumbo nucifera HOM05D002039 ORTHO05D005369 4.2e-32 142.1 108 62.0
Peaxi162Scf00243g00056 Petunia axillaris HOM05D002039 ORTHO05D005369 4.2e-32 142.1 109 64.2
Actinidia16564 Actinidia chinensis HOM05D002039 ORTHO05D005369 7.2e-32 141.4 109 64.2
Nitab4.5_0000516g0120 Nicotiana tabacum HOM05D002039 ORTHO05D005369 9.3e-32 141.0 158 67.1
Aqoxy1G02330 Aquilegia oxysepala HOM05D002039 ORTHO05D005369 1.2e-31 140.6 108 63.9
Cfa000513 Carpinus fangiana HOM05D002039 ORTHO05D005369 1.2e-31 140.6 109 61.5
Psat1g203480 Pisum sativum HOM05D002039 ORTHO05D005369 1.2e-31 140.6 108 62.0
Lalb_Chr20g0121641 Lupinus albus HOM05D002039 ORTHO05D005369 1.6e-31 140.2 110 62.7
CSS0034765 Camellia sinensis var. sinensis HOM05D002039 ORTHO05D005369 2.1e-31 139.8 109 62.4
Duzib235G0008 Durio zibethinus HOM05D002039 ORTHO05D005369 4.6e-31 138.7 109 59.6
Glyma.13G176900 Glycine max HOM05D002039 ORTHO05D005369 4.6e-31 138.7 110 62.7
Nitab4.5_0002219g0040 Nicotiana tabacum HOM05D002039 ORTHO05D005369 4.6e-31 138.7 109 62.4
Solyc03g006330.4 Solanum lycopersicum HOM05D002039 ORTHO05D005369 4.6e-31 138.7 112 58.9
Gohir.D10G027700 Gossypium hirsutum HOM05D002039 ORTHO05D005369 6.1e-31 138.3 109 62.4
Gorai.011G029600 Gossypium raimondii HOM05D002039 ORTHO05D005369 6.1e-31 138.3 109 62.4
Potri.011G056800 Populus trichocarpa HOM05D002039 ORTHO05D005369 6.1e-31 138.3 108 59.3
Sopen03g002340 Solanum pennellii HOM05D002039 ORTHO05D005369 6.1e-31 138.3 112 58.9
PGSC0003DMG400012816 Solanum tuberosum HOM05D002039 ORTHO05D005369 6.1e-31 138.3 112 58.9
SGA_v2.0_scaffold22G09679 Striga asiatica HOM05D002039 ORTHO05D005369 7.9e-31 137.9 109 62.4
arahy.Tifrunner.gnm1.ann1.Z7YHJK Arachis hypogaea HOM05D002039 ORTHO05D005369 1.0e-30 137.5 109 62.4
MSTRG.15860 Avicennia marina HOM05D002039 ORTHO05D005369 1.0e-30 137.5 109 60.6
CAN.G189.50 Capsicum annuum HOM05D002039 ORTHO05D005369 1.0e-30 137.5 113 57.5
Nitab4.5_0008414g0030 Nicotiana tabacum HOM05D002039 ORTHO05D005369 1.0e-30 137.5 109 61.5
PGR004G1346 Punica granatum HOM05D002039 ORTHO05D005369 1.0e-30 137.5 109 62.4
Rhsim13G0179800 Rhododendron simsii HOM05D002039 ORTHO05D005369 1.0e-30 137.5 108 64.8
GSVIVG01021096001 Vitis vinifera HOM05D002039 ORTHO05D005369 1.8e-30 136.7 110 62.7
Migut.M01118 Erythranthe guttata HOM05D002039 ORTHO05D005369 3.0e-30 136.0 109 61.5
Zm00001eb322150 Zea mays HOM05D002039 ORTHO05D005369 3.0e-30 136.0 178 64.0
Cc02_g13670 Coffea canephora HOM05D002039 ORTHO05D005369 3.9e-30 135.6 109 60.6
COL.COLO4_31433 Corchorus olitorius HOM05D002039 ORTHO05D005369 3.9e-30 135.6 110 60.9
Eucgr.E03253 Eucalyptus grandis HOM05D002039 ORTHO05D005369 3.9e-30 135.6 109 60.6
TWI38G1755 Tripterygium wilfordii HOM05D002039 ORTHO05D005369 3.9e-30 135.6 108 60.2
Glyma.07G199500 Glycine max HOM05D002039 ORTHO05D005369 5.1e-30 135.2 110 61.8
Medtr2g014290 Medicago truncatula HOM05D002039 ORTHO05D005369 5.1e-30 135.2 110 59.1
VMungo0251G3185 Vigna mungo HOM05D002039 ORTHO05D005369 5.1e-30 135.2 110 62.7
Gohir.A10G027300 Gossypium hirsutum HOM05D002039 ORTHO05D005369 6.7e-30 134.8 109 61.5
Manes.17G048100 Manihot esculenta HOM05D002039 ORTHO05D005369 6.7e-30 134.8 175 57.7
CSS0048533 Camellia sinensis var. sinensis HOM05D002039 ORTHO05D005369 8.7e-30 134.4 109 59.6
Carub.0001s2680 Capsella rubella HOM05D002039 ORTHO05D005369 8.7e-30 134.4 111 63.1
CAN.G529.28 Capsicum annuum HOM05D002039 ORTHO05D005369 8.7e-30 134.4 109 60.6
Prupe.4G051100 Prunus persica HOM05D002039 ORTHO05D005369 8.7e-30 134.4 110 60.0
Thecc.06G183000 Theobroma cacao HOM05D002039 ORTHO05D005369 8.7e-30 134.4 109 60.6
vmacro03908 Vaccinium macrocarpon HOM05D002039 ORTHO05D005369 8.7e-30 134.4 118 58.5
Phvul.002G230800 Phaseolus vulgaris HOM05D002039 ORTHO05D005369 1.1e-29 134.0 110 60.9
Sc05g0007500 Simmondsia chinensis HOM05D002039 ORTHO05D005369 1.1e-29 134.0 108 60.2
Ah.09g237510 Amaranthus hybridus HOM05D002039 ORTHO05D005369 1.5e-29 133.7 109 60.6
MD10G1291000 Malus domestica HOM05D002039 ORTHO05D005369 1.5e-29 133.7 110 61.8
SGA_v2.0_scaffold100G29704 Striga asiatica HOM05D002039 ORTHO05D005369 1.5e-29 133.7 109 59.6
Aa31sc86G80 Aethionema arabicum HOM05D002039 ORTHO05D005369 2.5e-29 132.9 111 63.1
MSTRG.7349 Avicennia marina HOM05D002039 ORTHO05D005369 2.5e-29 132.9 109 62.4
Potri.004G047300 Populus trichocarpa HOM05D002039 ORTHO05D005369 2.5e-29 132.9 109 60.6
AT1G28340 Arabidopsis thaliana HOM05D002039 ORTHO05D005369 3.3e-29 132.5 111 62.2
Duzib160G0651 Durio zibethinus HOM05D002039 ORTHO05D005369 3.3e-29 132.5 109 58.7
Thhalv10007074m.g Eutrema salsugineum HOM05D002039 ORTHO05D005369 3.3e-29 132.5 111 62.2
AUR62014853 Chenopodium quinoa HOM05D002039 ORTHO05D005369 4.3e-29 132.1 108 60.2
VMungo0540G2072 Vigna mungo HOM05D002039 ORTHO05D005369 4.3e-29 132.1 112 58.9
CARHR027830 Cardamine hirsuta HOM05D002039 ORTHO05D005369 7.4e-29 131.3 113 61.1
Sopen02g022710 Solanum pennellii HOM05D002039 ORTHO05D005369 7.4e-29 131.3 109 59.6
PGSC0003DMG400029712 Solanum tuberosum HOM05D002039 ORTHO05D005369 9.7e-29 131.0 109 58.7
AL1G41940 Arabidopsis lyrata HOM05D002039 ORTHO05D005369 1.3e-28 130.6 111 61.3
HPP92_014191 Vanilla planifolia HOM05D002039 ORTHO05D005369 1.3e-28 130.6 113 59.3
Hma1.2p1_0208F.1_g088390 Hydrangea macrophylla HOM05D002039 ORTHO05D005369 1.6e-28 130.2 109 59.6
Sabra04G0029600 Salix brachista HOM05D002039 ORTHO05D005369 1.6e-28 130.2 109 58.7
Glyma.13G236700 Glycine max HOM05D002039 ORTHO05D005369 2.2e-28 129.8 108 61.1
Solyc02g077850.3 Solanum lycopersicum HOM05D002039 ORTHO05D005369 2.2e-28 129.8 109 58.7
CiPaw.10G051500 Carya illinoinensis HOM05D002039 ORTHO05D005369 3.7e-28 129.0 109 59.6
DCAR_004055 Daucus carota HOM05D002039 ORTHO05D005369 3.7e-28 129.0 252 48.0
Glyma.15G076900 Glycine max HOM05D002039 ORTHO05D005369 3.7e-28 129.0 111 59.5
Sabra11G0038600 Salix brachista HOM05D002039 ORTHO05D005369 3.7e-28 129.0 121 54.5
EL10Ac8g20423 Beta vulgaris HOM05D002039 ORTHO05D005369 6.3e-28 128.3 107 60.7
Phvul.006G183300 Phaseolus vulgaris HOM05D002039 ORTHO05D005369 6.3e-28 128.3 115 56.5
BcaB07g32450 Brassica carinata HOM05D002039 ORTHO05D005369 1.1e-27 127.5 113 60.2
Ciclev10014609m.g Citrus clementina HOM05D002039 ORTHO05D005369 1.1e-27 127.5 110 59.1
ClCG03G008070 Citrullus lanatus HOM05D002039 ORTHO05D005369 1.4e-27 127.1 190 42.6
Cpa.g.sc27.19 Carica papaya HOM05D002039 ORTHO05D005369 1.8e-27 126.7 132 53.0
Lj4g0026541 Lotus japonicus HOM05D002039 ORTHO05D005369 2.4e-27 126.3 110 59.1
SEGI_16004 Sequoiadendron giganteum HOM05D002039 ORTHO05D005369 2.4e-27 126.3 111 59.5
arahy.Tifrunner.gnm1.ann1.61YHCL Arachis hypogaea HOM05D002039 ORTHO05D005369 3.1e-27 125.9 108 57.4
ECA234G4172 Erigeron canadensis HOM05D002039 ORTHO05D005369 5.3e-27 125.2 109 56.9
Lj6g0006997 Lotus japonicus HOM05D002039 ORTHO05D005369 5.3e-27 125.2 108 57.4
HanXRQChr16g0517651 Helianthus annuus HOM05D002039 ORTHO05D005369 6.9e-27 124.8 109 56.9
Manes.16G030250 Manihot esculenta HOM05D002039 ORTHO05D005369 6.9e-27 124.8 108 59.3
Sp1g24580 Schrenkiella parvula HOM05D002039 ORTHO05D005369 6.9e-27 124.8 111 59.5
THA.LOC104820560 Tarenaya hassleriana HOM05D002039 ORTHO05D005369 6.9e-27 124.8 109 57.8
Gohir.D09G072900 Gossypium hirsutum HOM05D002039 ORTHO05D005369 1.2e-26 124.0 110 58.2
Os07g0501800 Oryza sativa ssp. japonica HOM05D002039 ORTHO05D005369 2.0e-26 123.2 113 55.8
MELO3C002622.2 Cucumis melo HOM05D002039 ORTHO05D005369 2.6e-26 122.9 107 60.7
CsaV3_1G012480 Cucumis sativus L. HOM05D002039 ORTHO05D005369 2.6e-26 122.9 107 60.7
PSO541G3961 Papaver somniferum HOM05D002039 ORTHO05D005369 3.4e-26 122.5 108 56.5
AUR62017049 Chenopodium quinoa HOM05D002039 ORTHO05D005369 4.5e-26 122.1 127 52.0
BcaC05g26843 Brassica carinata HOM05D002039 ORTHO05D005369 5.9e-26 121.7 112 57.1
C05p27240 Brassica napus HOM05D002039 ORTHO05D005369 5.9e-26 121.7 112 57.1
BolC5t31438H Brassica oleracea HOM05D002039 ORTHO05D005369 5.9e-26 121.7 112 57.1
A09p37720 Brassica napus HOM05D002039 ORTHO05D005369 7.7e-26 121.3 112 57.1
BraA09t39283Z Brassica rapa HOM05D002039 ORTHO05D005369 7.7e-26 121.3 112 57.1
RcHm_v2.0_Chr5g0008961 Rosa chinensis HOM05D002039 ORTHO05D005369 7.7e-26 121.3 109 56.9
Lsat_1_v5_gn_4_52181 Lactuca sativa HOM05D002039 ORTHO05D005369 1.7e-25 120.2 93 62.4
arahy.Tifrunner.gnm1.ann1.TT4JII Arachis hypogaea HOM05D002039 ORTHO05D005369 8.5e-25 117.9 110 55.5
DCAR_003390 Daucus carota HOM05D002039 ORTHO05D005369 2.5e-24 116.3 99 56.6
PSO675G8387 Papaver somniferum HOM05D002039 ORTHO05D005369 1.6e-23 113.6 108 52.8
DCAR_024226 Daucus carota HOM05D002069 ORTHO05D001421 3.0e-22 109.4 88 58.0
Ah.14g089640 Amaranthus hybridus HOM05D005633 ORTHO05D007003 5.1e-22 108.6 98 54.1
Nitab4.5_0011102g0020 Nicotiana tabacum HOM05D002039 ORTHO05D005369 1.5e-21 107.1 136 66.9
Atru.chr10.1813 Acer truncatum HOM05D002039 ORTHO05D005369 2.8e-20 102.8 109 50.5
TWI38G1298 Tripterygium wilfordii HOM05D002039 ORTHO05D005369 8.2e-20 101.3 69 65.2
Gorai.006G087900 Gossypium raimondii HOM05D002039 ORTHO05D005369 4.1e-19 99.0 70 61.4
Hund21210 Selenicereus undatus HOM05D002039 ORTHO05D005369 4.1e-19 99.0 104 44.2
Gohir.A09G073200 Gossypium hirsutum HOM05D002039 ORTHO05D005369 1.2e-18 97.4 70 60.0
TAR636G0948 Trochodendron aralioides HOM05D000101 ORTHO05D000089 5.0e-17 92.0 139 39.6
CDE02G1413 Ceratophyllum demersum HOM05D002039 ORTHO05D026939 4.7e-15 85.5 169 32.5
Hund23784 Selenicereus undatus HOM05D002039 ORTHO05D005369 6.1e-15 85.1 136 37.5
Mapoly0037s0073 Marchantia polymorpha HOM05D002039 ORTHO05D005369 7.4e-13 78.2 94 48.9
Pp3c16_5720 Physcomitrium patens HOM05D002039 ORTHO05D005369 2.8e-12 76.3 102 46.1
AagrBONN_evm.TU.Sc2ySwM_344.4839 Anthoceros agrestis HOM05D002039 ORTHO05D005369 1.4e-11 73.9 92 43.5
Pp3c2_37290 Physcomitrium patens HOM05D002039 ORTHO05D005369 7.7e-10 68.2 89 46.1
arahy.Tifrunner.gnm1.ann1.V7QGVL Arachis hypogaea HOM05D002039 ORTHO05D026939 3.8e-09 65.9 121 35.5
FAN11G1708 Fragaria x ananassa HOM05D002039 ORTHO05D005369 6.5e-09 65.1 43 67.4
FAN16G0204 Fragaria x ananassa HOM05D002039 ORTHO05D005369 6.5e-09 65.1 43 67.4
FAN25G2208 Fragaria x ananassa HOM05D002039 ORTHO05D005369 6.5e-09 65.1 43 67.4
FAN21G1480 Fragaria x ananassa HOM05D002039 ORTHO05D005369 4.2e-08 62.4 43 65.1
Pp3c7_20780 Physcomitrium patens HOM05D002039 ORTHO05D005369 9.4e-08 61.2 89 42.7
arahy.Tifrunner.gnm1.ann1.DG5TA8 Arachis hypogaea HOM05D002039 ORTHO05D083419 2.1e-07 60.1 42 64.3
arahy.Tifrunner.gnm1.ann1.WU9FE7 Arachis hypogaea HOM05D002039 ORTHO05D026939 6.1e-07 58.5 99 36.4
Pp3c13_11270 Physcomitrium patens HOM05D002039 ORTHO05D005369 6.1e-07 58.5 91 45.1
Pp3c27_5920 Physcomitrium patens HOM05D002039 ORTHO05D005369 8.0e-07 58.2 106 38.7
Psat4g204200 Pisum sativum HOM05D002039 ORTHO05D005369 2.3e-06 56.6 34 67.6
arahy.Tifrunner.gnm1.ann1.L8ME0D Arachis hypogaea HOM05D002039 ORTHO05D026939 3.0e-06 56.2 99 35.4
Lj5g0010874 Lotus japonicus HOM05D002039 ORTHO05D005834 8.8e-06 54.7 141 52.5


User provided reference genes

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