Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0270 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 2.2e-238 828.6 413 100.0
CDE02G1131 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 2.6e-191 672.2 424 82.5
MELO3C007668.2 Cucumis melo HOM05D004796 ORTHO05D006527 1.9e-165 586.3 457 67.2
ClCG01G017940 Citrullus lanatus HOM05D004796 ORTHO05D006527 1.0e-163 580.5 454 66.5
Nn5g30704 Nelumbo nucifera HOM05D004796 ORTHO05D006527 1.8e-163 579.7 441 68.9
TAR628G0926 Trochodendron aralioides HOM05D004796 ORTHO05D006527 4.3e-162 575.1 434 68.4
CSS0047287 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 9.7e-162 573.9 454 65.2
Aqoxy5G00233 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 1.7e-161 573.2 453 65.1
arahy.Tifrunner.gnm1.ann1.P6WLKW Arachis hypogaea HOM05D004796 ORTHO05D006527 2.2e-161 572.8 445 67.0
arahy.Tifrunner.gnm1.ann1.R82CC3 Arachis hypogaea HOM05D004796 ORTHO05D006527 2.2e-161 572.8 445 67.0
CSS0039666 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 2.2e-161 572.8 454 65.2
THA.LOC104798404 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 2.8e-161 572.4 458 64.8
Thecc.01G079500 Theobroma cacao HOM05D004796 ORTHO05D006527 2.8e-161 572.4 453 66.2
Gohir.D05G257400 Gossypium hirsutum HOM05D004796 ORTHO05D006527 4.8e-161 571.6 453 65.3
Gorai.009G268800 Gossypium raimondii HOM05D004796 ORTHO05D006527 4.8e-161 571.6 453 65.3
PSO170G1369 Papaver somniferum HOM05D004796 ORTHO05D006527 4.8e-161 571.6 456 65.1
Gohir.A05G255700 Gossypium hirsutum HOM05D004796 ORTHO05D006527 6.3e-161 571.2 453 65.3
CiPaw.07G039300 Carya illinoinensis HOM05D004796 ORTHO05D006527 8.2e-161 570.9 430 67.7
Aa31LG1G16340 Aethionema arabicum HOM05D004796 ORTHO05D006527 1.1e-160 570.5 462 64.1
Aqoxy6G02400 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 1.4e-160 570.1 459 63.8
Manes.12G119000 Manihot esculenta HOM05D004796 ORTHO05D006527 1.4e-160 570.1 454 65.0
Haze_03962 Corylus avellana HOM05D004796 ORTHO05D006527 1.8e-160 569.7 430 67.2
Sed0020912 Sechium edule HOM05D004796 ORTHO05D006527 3.1e-160 568.9 457 65.2
PGSC0003DMG400030629 Solanum tuberosum HOM05D004796 ORTHO05D006527 3.1e-160 568.9 448 65.6
Duzib147G0087 Durio zibethinus HOM05D004796 ORTHO05D006527 4.1e-160 568.5 454 65.6
MBI11_g39360_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 6.9e-160 567.8 458 65.5
CAN.G1061.4 Capsicum annuum HOM05D004796 ORTHO05D006527 9.1e-160 567.4 458 64.2
Cfa006794 Carpinus fangiana HOM05D004796 ORTHO05D006527 1.5e-159 566.6 425 67.5
Cc07_g07590 Coffea canephora HOM05D004796 ORTHO05D006527 1.5e-159 566.6 454 63.7
Sopen02g036470 Solanum pennellii HOM05D004796 ORTHO05D006527 1.5e-159 566.6 434 67.1
PSO210G2597 Papaver somniferum HOM05D004796 ORTHO05D006527 2.0e-159 566.2 456 64.5
CAN.G529.24 Capsicum annuum HOM05D004796 ORTHO05D006527 2.6e-159 565.8 406 70.4
Nn4g24745 Nelumbo nucifera HOM05D004796 ORTHO05D006527 3.4e-159 565.5 408 69.9
Ciclev10025572m.g Citrus clementina HOM05D004796 ORTHO05D006527 4.5e-159 565.1 430 66.7
Lj2C425T5 Lonicera japonica HOM05D004796 ORTHO05D006527 4.5e-159 565.1 455 64.8
SGA_v2.0_scaffold121G33084 Striga asiatica HOM05D004796 ORTHO05D006527 4.5e-159 565.1 454 65.0
MSTRG.23646 Avicennia marina HOM05D004796 ORTHO05D006527 5.9e-159 564.7 457 65.0
Nitab4.5_0006325g0030 Nicotiana tabacum HOM05D004796 ORTHO05D006527 7.7e-159 564.3 434 67.1
Sabra08G0002600 Salix brachista HOM05D004796 ORTHO05D006527 1.0e-158 563.9 454 63.9
Oeu014312.1 Olea europaea HOM05D004796 ORTHO05D006527 2.2e-158 562.8 434 66.1
Potri.007G000600 Populus trichocarpa HOM05D004796 ORTHO05D006527 2.2e-158 562.8 451 63.6
PSO063G7095 Papaver somniferum HOM05D004796 ORTHO05D006527 2.9e-158 562.4 439 66.1
PGR004G2229 Punica granatum HOM05D004796 ORTHO05D006527 2.9e-158 562.4 456 64.0
MD15G1303800 Malus domestica HOM05D004796 ORTHO05D006527 3.8e-158 562.0 458 62.7
Atru.chr3.1085 Acer truncatum HOM05D004796 ORTHO05D006527 5.0e-158 561.6 457 63.5
Gohir.D12G078300 Gossypium hirsutum HOM05D004796 ORTHO05D006527 5.0e-158 561.6 453 64.5
QL06p038221 Quercus lobata HOM05D004796 ORTHO05D006527 5.0e-158 561.6 454 63.9
TWI63G0151 Tripterygium wilfordii HOM05D004796 ORTHO05D006527 5.0e-158 561.6 435 66.9
PSO782G2535 Papaver somniferum HOM05D004796 ORTHO05D006527 8.5e-158 560.8 460 63.5
Ah.03g139580 Amaranthus hybridus HOM05D004796 ORTHO05D006527 1.1e-157 560.5 419 68.3
Hma1.2p1_0477F.1_g160960 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.1e-157 560.5 443 65.7
Lalb_Chr09g0323791 Lupinus albus HOM05D004796 ORTHO05D006527 1.1e-157 560.5 439 66.7
Gohir.A12G081500 Gossypium hirsutum HOM05D004796 ORTHO05D006527 1.4e-157 560.1 453 64.0
Duzib187G1710 Durio zibethinus HOM05D004796 ORTHO05D006527 1.9e-157 559.7 453 64.2
Cpa.g.sc129.49 Carica papaya HOM05D004796 ORTHO05D006527 2.5e-157 559.3 436 66.1
Hma1.2p1_1953F.1_g308840 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 2.5e-157 559.3 443 65.7
HPP92_019516 Vanilla planifolia HOM05D004796 ORTHO05D006527 4.2e-157 558.5 430 67.4
AUR62007967 Chenopodium quinoa HOM05D004796 ORTHO05D006527 5.5e-157 558.1 417 67.1
Lalb_Chr16g0379061 Lupinus albus HOM05D004796 ORTHO05D006527 7.2e-157 557.8 444 65.8
Lj2g0010705 Lotus japonicus HOM05D004796 ORTHO05D006527 1.2e-156 557.0 413 68.3
Ca_24663_v3 Cicer arietinum L. HOM05D004796 ORTHO05D006527 1.6e-156 556.6 456 63.6
Hma1.2p1_0424F.1_g150270 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.6e-156 556.6 456 64.3
HanXRQChr14g0447651 Helianthus annuus HOM05D004796 ORTHO05D006527 2.1e-156 556.2 456 64.0
Sc07g0000270 Simmondsia chinensis HOM05D004796 ORTHO05D006527 3.6e-156 555.4 457 62.6
DCAR_010778 Daucus carota HOM05D004796 ORTHO05D006527 4.7e-156 555.1 428 66.8
Medtr5g014820 Medicago truncatula HOM05D004796 ORTHO05D006527 4.7e-156 555.1 455 63.1
SGA_v2.0_scaffold269G46256 Striga asiatica HOM05D004796 ORTHO05D006527 4.7e-156 555.1 462 63.6
CANSAT01G0390 Cannabis sativa HOM05D004796 ORTHO05D006527 6.1e-156 554.7 431 65.4
Dinv23067 Davidia involucrata HOM05D004796 ORTHO05D006527 3.0e-155 552.4 443 65.5
FvH4_1g18610 Fragaria vesca HOM05D004796 ORTHO05D006527 3.0e-155 552.4 457 62.6
Psat2g172800 Pisum sativum HOM05D004796 ORTHO05D006527 3.0e-155 552.4 457 64.3
Actinidia36405 Actinidia chinensis HOM05D004796 ORTHO05D006527 3.9e-155 552.0 405 69.9
Eucgr.I00651 Eucalyptus grandis HOM05D004796 ORTHO05D006527 3.9e-155 552.0 408 67.6
Prupe.6G213300 Prunus persica HOM05D004796 ORTHO05D006527 5.1e-155 551.6 461 61.8
VMungo1215G0536 Vigna mungo HOM05D004796 ORTHO05D006527 5.1e-155 551.6 438 64.4
Glyma.01G197100 Glycine max HOM05D004796 ORTHO05D006527 6.7e-155 551.2 449 63.5
Glyma.11G044600 Glycine max HOM05D004796 ORTHO05D006527 1.1e-154 550.4 449 63.3
FAN26G2906 Fragaria x ananassa HOM05D004796 ORTHO05D006527 4.4e-154 548.5 457 62.1
ATR1120G045 Amborella trichopoda HOM05D004796 ORTHO05D006527 7.4e-154 547.7 440 63.0
RcHm_v2.0_Chr2g0109391 Rosa chinensis HOM05D004796 ORTHO05D006527 7.4e-154 547.7 455 61.1
FAN23G2833 Fragaria x ananassa HOM05D004796 ORTHO05D006527 9.7e-154 547.4 457 62.1
Phvul.002G008200 Phaseolus vulgaris HOM05D004796 ORTHO05D006527 9.7e-154 547.4 430 64.7
ECA234G3987 Erigeron canadensis HOM05D004796 ORTHO05D006527 1.7e-153 546.6 413 66.8
FAN28G1552 Fragaria x ananassa HOM05D004796 ORTHO05D006527 2.2e-153 546.2 454 62.8
TPR.G28859 Trifolium pratense HOM05D004796 ORTHO05D006527 1.1e-152 543.9 429 65.3
Lsat_1_v5_gn_2_81541 Lactuca sativa HOM05D004796 ORTHO05D006527 1.4e-152 543.5 451 63.2
Sp2g28820 Schrenkiella parvula HOM05D004796 ORTHO05D006527 9.1e-152 540.8 458 62.0
Gorai.008G087200 Gossypium raimondii HOM05D004796 ORTHO05D006527 1.6e-151 540.0 441 64.2
AT5G65720 Arabidopsis thaliana HOM05D004796 ORTHO05D006527 7.7e-151 537.7 460 61.7
Zm00001eb310290 Zea mays HOM05D004796 ORTHO05D006527 1.7e-150 536.6 436 63.1
CARHR279720 Cardamine hirsuta HOM05D004796 ORTHO05D006527 3.8e-150 535.4 460 61.5
Thhalv10004176m.g Eutrema salsugineum HOM05D004796 ORTHO05D006527 3.8e-150 535.4 459 61.9
AL8G43440 Arabidopsis lyrata HOM05D004796 ORTHO05D006527 5.0e-150 535.0 461 62.3
HanXRQChr14g0461401 Helianthus annuus HOM05D004796 ORTHO05D006527 1.5e-149 533.5 408 66.4
A09p09140 Brassica napus HOM05D004796 ORTHO05D006527 2.5e-149 532.7 434 64.3
BraA09t36565Z Brassica rapa HOM05D004796 ORTHO05D006527 2.5e-149 532.7 434 64.3
SEGI_09827 Sequoiadendron giganteum HOM05D004796 ORTHO05D006527 2.5e-149 532.7 458 61.4
COL.COLO4_11645 Corchorus olitorius HOM05D004796 ORTHO05D006527 3.2e-149 532.3 408 68.4
Os09g0338400 Oryza sativa ssp. japonica HOM05D004796 ORTHO05D006527 4.2e-149 531.9 436 62.6
Carub.0008s2662 Capsella rubella HOM05D004796 ORTHO05D006527 5.5e-149 531.6 459 61.4
BcaB04g20026 Brassica carinata HOM05D004796 ORTHO05D006527 9.4e-149 530.8 433 63.7
C09p10650 Brassica napus HOM05D004796 ORTHO05D006527 2.1e-148 529.6 433 63.5
BolC9t53963H Brassica oleracea HOM05D004796 ORTHO05D006527 2.1e-148 529.6 433 63.5
BcaC04g23250 Brassica carinata HOM05D004796 ORTHO05D006527 6.1e-148 528.1 433 63.5
SMO172G0132 Selaginella moellendorffii HOM05D004796 ORTHO05D006527 5.7e-146 521.5 407 65.8
Pp3c2_20850 Physcomitrium patens HOM05D004796 ORTHO05D006527 7.0e-144 514.6 436 61.2
CsaV3_6G044470 Cucumis sativus L. HOM05D004796 ORTHO05D006527 1.0e-142 510.8 458 60.7
CBR_g17082 Chara braunii HOM05D004796 ORTHO05D006527 1.7e-142 510.0 431 60.3
CBR_g17075 Chara braunii HOM05D004796 ORTHO05D006527 2.2e-142 509.6 431 60.3
Pp3c1_20380 Physcomitrium patens HOM05D004796 ORTHO05D006527 7.2e-141 504.6 436 59.9
Sabra07G0000600 Salix brachista HOM05D004796 ORTHO05D006527 6.1e-140 501.5 387 67.4
Mapoly0184s0007 Marchantia polymorpha HOM05D004796 ORTHO05D006527 1.0e-139 500.7 407 61.2
Migut.H00312 Erythranthe guttata HOM05D004796 ORTHO05D006527 2.8e-137 492.7 457 57.5
EL10Ac6g14948 Beta vulgaris HOM05D004796 ORTHO05D006527 1.2e-132 477.2 372 65.1
Aa31LG11G11240 Aethionema arabicum HOM05D004796 ORTHO05D006527 1.0e-131 474.2 378 64.0
MCO07G690 Micromonas commoda HOM05D004796 ORTHO05D006527 1.5e-130 470.3 407 57.7
Cre02.g146250 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D006527 4.4e-130 468.8 432 57.4
PRCOL_00005106 Prasinoderma coloniale HOM05D004796 ORTHO05D006527 1.7e-126 456.8 353 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 2.3e-126 456.4 409 57.9
Nitab4.5_0000396g0100 Nicotiana tabacum HOM05D004796 ORTHO05D006527 3.0e-123 446.0 377 63.4
SalBow3G1292 Salvia bowleyana HOM05D004796 ORTHO05D006527 2.6e-122 443.0 384 61.7
SalBow3G2368 Salvia bowleyana HOM05D004796 ORTHO05D006527 2.6e-122 443.0 384 61.5
SalBow3G3135 Salvia bowleyana HOM05D004796 ORTHO05D006527 2.6e-122 443.0 384 61.5
Solyc02g091900.4 Solanum lycopersicum HOM05D004796 ORTHO05D006527 3.5e-119 432.6 388 60.3
Haze_27134 Corylus avellana HOM05D004796 ORTHO05D006527 7.3e-117 424.9 341 61.0
Cfa026265 Carpinus fangiana HOM05D004796 ORTHO05D006527 1.0e-115 421.0 401 55.4
TAR381G1547 Trochodendron aralioides HOM05D004796 ORTHO05D006527 8.3e-113 411.4 382 57.9
GSVIVG01008311001 Vitis vinifera HOM05D004796 ORTHO05D006527 9.2e-104 381.3 377 56.8
GSVIVG01003606001 Vitis vinifera HOM05D004796 ORTHO05D006527 6.6e-94 348.6 321 60.1
MBI11_g19461_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 2.4e-91 340.1 278 64.0
THA.LOC104817643 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 2.4e-91 340.1 322 56.8
Peaxi162Scf00096g01526 Petunia axillaris HOM05D004796 ORTHO05D006527 4.9e-89 332.4 375 50.9
Peaxi162Scf00854g00110 Petunia axillaris HOM05D004796 ORTHO05D006527 1.0e-86 324.7 396 48.5
Dinv26978 Davidia involucrata HOM05D004796 ORTHO05D016811 2.1e-55 220.7 173 68.8
ECA240G3001 Erigeron canadensis HOM05D004796 ORTHO05D006527 9.1e-51 205.3 217 52.1
THA.LOC104800063 Tarenaya hassleriana HOM05D004796 ORTHO05D016811 4.6e-47 193.0 109 85.3
HanXRQChr14g0447641 Helianthus annuus HOM05D004796 ORTHO05D006527 7.9e-47 192.2 160 62.5
CBR_g8345 Chara braunii HOM05D004796 ORTHO05D034338 4.8e-44 183.0 388 33.2
FAN04G2432 Fragaria x ananassa HOM05D004796 ORTHO05D016811 2.1e-39 167.5 102 79.4
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 7.9e-39 165.6 163 56.4
RcHm_v2.0_Chr5g0045361 Rosa chinensis HOM05D004796 ORTHO05D006527 4.8e-36 156.4 120 62.5
FvH4_4g11530 Fragaria vesca HOM05D004796 ORTHO05D016811 1.0e-33 148.7 86 84.9
FvH4_3g39110 Fragaria vesca HOM05D004796 ORTHO05D016811 3.2e-32 143.7 88 78.4
FAN11G3064 Fragaria x ananassa HOM05D004796 ORTHO05D016811 9.4e-32 142.1 83 84.3
MCO10G007 Micromonas commoda HOM05D004796 ORTHO05D034338 2.3e-30 137.5 388 30.4
HPP92_019568 Vanilla planifolia HOM05D004796 ORTHO05D016811 4.0e-30 136.7 84 81.0
Cre07.g322000 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D034338 8.8e-30 135.6 433 28.2
RcHm_v2.0_Chr2g0109351 Rosa chinensis HOM05D004796 ORTHO05D006527 5.7e-21 106.3 76 64.5
Cfa010080 Carpinus fangiana HOM05D000911 ORTHO05D000890 9.1e-19 99.0 53 83.0
Duzib160G0718 Durio zibethinus HOM05D004796 ORTHO05D006527 7.2e-16 89.4 170 33.5
BcaC01g02817 Brassica carinata HOM05D004796 ORTHO05D016811 4.4e-13 80.1 55 76.4
Haze_26851 Corylus avellana HOM05D005551 ORTHO05D007207 3.1e-11 73.9 389 22.4
C03p59950 Brassica napus HOM05D004796 ORTHO05D016811 9.2e-11 72.4 57 68.4
BolC3t18259H Brassica oleracea HOM05D004796 ORTHO05D016811 1.2e-10 72.0 42 81.0
BcaB07g34093 Brassica carinata HOM05D005551 ORTHO05D007207 5.6e-08 63.2 423 22.5
Aa31sc55G30 Aethionema arabicum HOM05D005551 ORTHO05D007207 7.3e-08 62.8 280 23.9
C05p06600 Brassica napus HOM05D005551 ORTHO05D007207 1.2e-07 62.0 427 22.0
BolC5t29420H Brassica oleracea HOM05D005551 ORTHO05D007207 1.2e-07 62.0 427 22.0
BraA06t23757Z Brassica rapa HOM05D005551 ORTHO05D007207 1.2e-07 62.0 387 22.5
THA.LOC104816954 Tarenaya hassleriana HOM05D005551 ORTHO05D007207 4.7e-07 60.1 243 25.1
CDE04G0986 Ceratophyllum demersum HOM05D005551 ORTHO05D007207 6.1e-07 59.7 388 22.2
CAN.G212.10 Capsicum annuum HOM05D000007 ORTHO05D000039 8.0e-07 59.3 54 55.6
CBR_g4414 Chara braunii HOM05D005551 ORTHO05D007207 8.0e-07 59.3 401 21.9
CBR_g45931 Chara braunii HOM05D005551 ORTHO05D007207 8.0e-07 59.3 401 21.9
Sp1g07150 Schrenkiella parvula HOM05D005551 ORTHO05D007207 1.4e-06 58.5 387 22.7
MELO3C014533.2 Cucumis melo HOM05D005551 ORTHO05D007207 2.3e-06 57.8 390 22.1
Glyma.15G127400 Glycine max HOM05D005551 ORTHO05D007207 2.3e-06 57.8 387 21.7
Actinidia29559 Actinidia chinensis HOM05D005551 ORTHO05D007207 3.0e-06 57.4 199 25.1
Glyma.09G021000 Glycine max HOM05D005551 ORTHO05D007207 3.0e-06 57.4 387 22.0
HPP92_018084 Vanilla planifolia HOM05D005551 ORTHO05D007207 4.0e-06 57.0 229 21.4
Lj2C43G5 Lonicera japonica HOM05D005551 ORTHO05D007207 5.2e-06 56.6 99 37.4
unitig_749.g13431 Utricularia gibba HOM05D005551 ORTHO05D007207 5.2e-06 56.6 388 22.2
CsaV3_6G038690 Cucumis sativus L. HOM05D005551 ORTHO05D001189 8.9e-06 55.8 390 22.6
Sed0003862 Sechium edule HOM05D005551 ORTHO05D007207 8.9e-06 55.8 434 20.5


User provided reference genes

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